Project measure / variable:   Bennett4   TMAO_post_HP

ID, description, units MPD:114767   TMAO_post_HP   plasma trimethylamine N-oxide (TMAO) amount, post-diet   [µM]  HP group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 17-20wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Bennett4 - plasma trimethylamine N-oxide (TMAO) amount, post-diet HP group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means2.5768   µM
Median of the strain means2.15   µM
SD of the strain means± 1.9423
Coefficient of variation (CV)0.7537
Min–max range of strain means0.92   –   9.94   µM
Mean sample size per strain4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 372.5193 17.739 3.0217 0.0002
Residuals 78 457.897 5.8705


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 1.26 0.18166   5 0.08124 0.1442 1.1, 1.5 -0.68
CC002/Unc f 2.42 0.91214   5 0.40792 0.3769 1.8, 4.0 -0.08
CC004/TauUnc f 1.2 0.41231   5 0.18439 0.3436 0.9, 1.7 -0.71
CC006/TauUnc f 2.9 1.3515   4 0.67577 0.466 1.2, 4.4 0.17
CC008/GeniUnc f 1.5 0.36515   4 0.18257 0.2434 1.1, 1.9 -0.55
CC011/Unc f 2.46 1.23   5 0.55009 0.5 1.3, 4.4 -0.06
CC012/GeniUnc f 1.4 0.67823   5 0.30332 0.4845 0.7, 2.3 -0.61
CC019/TauUnc f 3.38 2.6818   5 1.1993 0.7934 1.0, 7.6 0.41
CC024/GeniUnc f 1.4 0.42426   2   0.3 0.303 1.1, 1.7 -0.61
CC027/GeniUnc f 2.02 0.89833   5 0.40175 0.4447 1.5, 3.6 -0.29
CC028/GeniUnc f 1.475 0.4113   4 0.20565 0.2788 1.0, 2.0 -0.57
CC030/GeniUnc f 2.08 0.48683   5 0.21772 0.2341 1.5, 2.8 -0.26
CC032/GeniUnc f 2.49 0.6523   5 0.29172 0.262 1.9, 3.6 -0.04
CC035/Unc f 9.94 9.129   5 4.0826 0.9184 3.0, 25.4 3.79
CC036/Unc f 3.825 2.4391   4 1.2195 0.6377 1.8, 6.7 0.64
CC037/TauUnc f 1.32 0.27749   5 0.1241 0.2102 1.1, 1.8 -0.65
CC040/TauUnc f 2.22 1.8979   5 0.84876 0.8549 0.6, 5.1 -0.18
CC041/TauUnc f 3.08 2.0092   5 0.89855 0.6523 1.0, 5.5 0.26
CC045/GeniUnc f 1.3 0.33665   4 0.16833 0.259 1.1, 1.8 -0.66
CC059/TauUnc f 2.9 1.6985   5 0.75961 0.5857 1.6, 5.7 0.17
CC063/Unc f 5.2 2.3065   3 1.3317 0.4436 3.4, 7.8 1.35
CC071/TauUnc f 0.92 0.13038   5 0.05831 0.1417 0.8, 1.1 -0.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 1.26 1.0835565845 3.4171954501 -0.8971954501
CC002/Unc f 2.42 1.0835565845 4.5771954501 0.2628045499
CC004/TauUnc f 1.2 1.0835565845 3.3571954501 -0.9571954501
CC006/TauUnc f 2.9 1.2114530902 5.3118178336 0.4881821664
CC008/GeniUnc f 1.5 1.2114530902 3.9118178336 -0.9118178336
CC011/Unc f 2.46 1.0835565845 4.6171954501 0.3028045499
CC012/GeniUnc f 1.4 1.0835565845 3.5571954501 -0.7571954501
CC019/TauUnc f 3.38 1.0835565845 5.5371954501 1.2228045499
CC024/GeniUnc f 1.4 1.7132533903 4.8108254903 -2.0108254903
CC027/GeniUnc f 2.02 1.0835565845 4.1771954501 -0.1371954501
CC028/GeniUnc f 1.475 1.2114530902 3.8868178336 -0.9368178336
CC030/GeniUnc f 2.08 1.0835565845 4.2371954501 -0.0771954501
CC032/GeniUnc f 2.49 1.0835565845 4.6471954501 0.3328045499
CC035/Unc f 9.94 1.0835565845 12.0971954501 7.7828045499
CC036/Unc f 3.825 1.2114530902 6.2368178336 1.4131821664
CC037/TauUnc f 1.32 1.0835565845 3.4771954501 -0.8371954501
CC040/TauUnc f 2.22 1.0835565845 4.3771954501 0.0628045499
CC041/TauUnc f 3.08 1.0835565845 5.2371954501 0.9228045499
CC045/GeniUnc f 1.3 1.2114530902 3.7118178336 -1.1118178336
CC059/TauUnc f 2.9 1.0835565845 5.0571954501 0.7428045499
CC063/Unc f 5.2 1.3988655355 7.984927351 2.415072649
CC071/TauUnc f 0.92 1.0835565845 3.0771954501 -1.2371954501




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA