Project measure / variable:   Bennett4   CHOL_base_HFHS

ID, description, units MPD:114754   CHOL_base_HFHS   plasma cholesterol amount, baseline   [mg/dL]  HFHS group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 8-11wks
Procedure lipid profile
Ontology mappings

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  STRAIN COMPARISON PLOT
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Bennett4 - plasma cholesterol amount, baseline HFHS group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means142.6   mg/dL
Median of the strain means135.7   mg/dL
SD of the strain means± 28.427
Coefficient of variation (CV)0.1993
Min–max range of strain means98.22   –   200.2   mg/dL
Mean sample size per strain4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 74258.7535 3536.1311 7.7813 < 0.0001
Residuals 79 35900.957 454.4425


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 142.6 16.093   5 7.1969 0.1128 129.2, 169.5 0.0
CC002/Unc f 131.3 11.316   5 5.0608 0.0862 115.8, 143.2 -0.4
CC004/TauUnc f 107.9 11.431   5 5.1119 0.106 89.7, 118.8 -1.22
CC006/TauUnc f 200.2 34.485   4 17.243 0.1723 160.5, 234.0 2.03
CC008/GeniUnc f 114.0 12.158   4 6.0791 0.1066 96.25, 123.6 -1.01
CC011/Unc f 172.4 14.741   5 6.5922 0.0855 156.2, 191.7 1.05
CC012/GeniUnc f 127.8 12.591   5 5.6308 0.0986 118.2, 149.8 -0.52
CC019/TauUnc f 126.0 17.557   5 7.8519 0.1394 99.15, 141.6 -0.58
CC024/GeniUnc f 117.6 16.617   2   11.75 0.1414 105.8, 129.3 -0.88
CC027/GeniUnc f 147.4 25.072   5 11.213 0.17 125.4, 189.3 0.17
CC028/GeniUnc f 146.9 11.656   4 5.8282 0.0794 131.4, 156.3 0.15
CC030/GeniUnc f 191.6 24.042   5 10.752 0.1255 161.7, 218.8 1.72
CC032/GeniUnc f 130.2 18.888   5 8.447 0.1451 100.5, 146.1 -0.44
CC035/Unc f 148.9 17.051   5 7.6253 0.1145 133.2, 169.2 0.22
CC036/Unc f 125.8 18.828   5 8.4203 0.1497 93.2, 139.2 -0.59
CC037/TauUnc f 115.5 14.693   5 6.5708 0.1272 92.4, 130.9 -0.95
CC040/TauUnc f 136.2 31.432   5 14.057 0.2308 96.0, 172.2 -0.23
CC041/TauUnc f 197.0 23.635   5 10.57 0.12 165.2, 218.1 1.91
CC045/GeniUnc f 165.8 36.805   4 18.402 0.222 114.6, 201.9 0.82
CC059/TauUnc f 159.3 23.773   5 10.632 0.1492 126.0, 189.9 0.59
CC063/Unc f 98.22 12.918   3 7.4585 0.1315 89.1, 113.0 -1.56
CC071/TauUnc f 135.2 31.05   5 13.886 0.2297 112.5, 187.2 -0.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 142.64 9.5335459741 161.6160485883 123.6639514117
CC002/Unc f 131.26 9.5335459741 150.2360485883 112.2839514117
CC004/TauUnc f 107.86 9.5335459741 126.8360485883 88.8839514117
CC006/TauUnc f 200.175 10.6588284323 221.3908672939 178.9591327061
CC008/GeniUnc f 114.0375 10.6588284323 135.2533672939 92.8216327061
CC011/Unc f 172.36 9.5335459741 191.3360485883 153.3839514117
CC012/GeniUnc f 127.76 9.5335459741 146.7360485883 108.7839514117
CC019/TauUnc f 125.95 9.5335459741 144.9260485883 106.9739514117
CC024/GeniUnc f 117.55 15.073859728 147.5537672646 87.5462327354
CC027/GeniUnc f 147.44 9.5335459741 166.4160485883 128.4639514117
CC028/GeniUnc f 146.85 10.6588284323 168.0658672939 125.6341327061
CC030/GeniUnc f 191.64 9.5335459741 210.6160485883 172.6639514117
CC032/GeniUnc f 130.2 9.5335459741 149.1760485883 111.2239514117
CC035/Unc f 148.92 9.5335459741 167.8960485883 129.9439514117
CC036/Unc f 125.8 9.5335459741 144.7760485883 106.8239514117
CC037/TauUnc f 115.48 9.5335459741 134.4560485883 96.5039514117
CC040/TauUnc f 136.2 9.5335459741 155.1760485883 117.2239514117
CC041/TauUnc f 197.02 9.5335459741 215.9960485883 178.0439514117
CC045/GeniUnc f 165.75 10.6588284323 186.9658672939 144.5341327061
CC059/TauUnc f 159.3 9.5335459741 178.2760485883 140.3239514117
CC063/Unc f 98.2166666667 12.3077549293 122.7146400531 73.7186932802
CC071/TauUnc f 135.18 9.5335459741 154.1560485883 116.2039514117




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA