Project measure / variable:   Bennett4   CHOL_base_HP

ID, description, units MPD:114753   CHOL_base_HP   plasma cholesterol amount, baseline   [mg/dL]  HP group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 8-11wks
Procedure lipid profile
Ontology mappings

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  STRAIN COMPARISON PLOT
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Bennett4 - plasma cholesterol amount, baseline HP group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means138.5   mg/dL
Median of the strain means135.9   mg/dL
SD of the strain means± 27.748
Coefficient of variation (CV)0.2004
Min–max range of strain means91.9   –   188.4   mg/dL
Mean sample size per strain4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 72295.5601 3442.6457 8.7802 < 0.0001
Residuals 79 30975.2793 392.0921


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 134.8 31.166   5 13.938 0.2311 117.9, 190.1 -0.13
CC002/Unc f 130.1 3.2143   5 1.4375 0.0247 125.4, 134.4 -0.3
CC004/TauUnc f 92.1 8.8467   5 3.9564 0.0961 82.5, 104.0 -1.67
CC006/TauUnc f 181.9 51.03   4 25.513 0.2805 107.8, 222.9 1.56
CC008/GeniUnc f 113.8 7.5013   4 3.7507 0.0659 104.1, 122.1 -0.89
CC011/Unc f 173.5 22.371   5 10.005 0.129 151.8, 208.5 1.26
CC012/GeniUnc f 123.3 9.8932   5 4.4244 0.0802 108.3, 131.4 -0.55
CC019/TauUnc f 118.4 10.175   5 4.5503 0.086 103.2, 126.0 -0.72
CC024/GeniUnc f 118.9 22.274   2   15.75 0.1873 103.2, 134.7 -0.71
CC027/GeniUnc f 141.3 26.94   5 12.048 0.1907 94.5, 159.6 0.1
CC028/GeniUnc f 140.7 9.573   4 4.7865 0.0681 131.7, 149.1 0.08
CC030/GeniUnc f 185.3 7.6833   5 3.4361 0.0415 176.1, 197.1 1.69
CC032/GeniUnc f 140.6 16.096   5 7.1984 0.1144 123.9, 162.6 0.08
CC035/Unc f 124.2 8.2295   5 3.6804 0.0663 112.8, 134.1 -0.52
CC036/Unc f 137.0 37.36   5 16.708 0.2727 91.5, 193.2 -0.05
CC037/TauUnc f 111.3 5.5844   5 2.4974 0.0502 102.9, 118.5 -0.98
CC040/TauUnc f 137.6 21.921   5 9.8032 0.1593 104.7, 163.1 -0.03
CC041/TauUnc f 188.4 18.308   5 8.1874 0.0972 173.1, 219.2 1.8
CC045/GeniUnc f 159.5 14.383   4 7.1917 0.0902 139.3, 170.1 0.76
CC059/TauUnc f 168.7 10.177   5 4.5513 0.0603 159.6, 184.2 1.09
CC063/Unc f 91.9 5.0319   3 2.9052 0.0548 86.1, 95.1 -1.68
CC071/TauUnc f 133.5 12.99   5 5.8095 0.0973 114.6, 148.8 -0.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 134.84 8.8554180397 152.4662686988 117.2137313012
CC002/Unc f 130.08 8.8554180397 147.7062686988 112.4537313012
CC004/TauUnc f 92.096 8.8554180397 109.7222686988 74.4697313012
CC006/TauUnc f 181.9 9.900658353 201.6067675001 162.1932324999
CC008/GeniUnc f 113.75 9.900658353 133.4567675001 94.0432324999
CC011/Unc f 173.46 8.8554180397 191.0862686988 155.8337313012
CC012/GeniUnc f 123.3 8.8554180397 140.9262686988 105.6737313012
CC019/TauUnc f 118.38 8.8554180397 136.0062686988 100.7537313012
CC024/GeniUnc f 118.95 14.0016453192 146.8195778692 91.0804221308
CC027/GeniUnc f 141.26 8.8554180397 158.8862686988 123.6337313012
CC028/GeniUnc f 140.675 9.900658353 160.3817675001 120.9682324999
CC030/GeniUnc f 185.26 8.8554180397 202.8862686988 167.6337313012
CC032/GeniUnc f 140.64 8.8554180397 158.2662686988 123.0137313012
CC035/Unc f 124.2 8.8554180397 141.8262686988 106.5737313012
CC036/Unc f 136.98 8.8554180397 154.6062686988 119.3537313012
CC037/TauUnc f 111.3 8.8554180397 128.9262686988 93.6737313012
CC040/TauUnc f 137.62 8.8554180397 155.2462686988 119.9937313012
CC041/TauUnc f 188.44 8.8554180397 206.0662686988 170.8137313012
CC045/GeniUnc f 159.475 9.900658353 179.1817675001 139.7682324999
CC059/TauUnc f 168.72 8.8554180397 186.3462686988 151.0937313012
CC063/Unc f 91.9 11.4322955305 114.6554150421 69.1445849579
CC071/TauUnc f 133.5 8.8554180397 151.1262686988 115.8737313012




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA