Project measure / variable:   Bennett4   ALT_post_HFHS

ID, description, units MPD:114736   ALT_post_HFHS   plasma alanine aminotransferase (ALT) amount, post-diet   [U/L]  HFHS group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 17-20wks
Procedure metabolic panel
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  STRAIN COMPARISON PLOT
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Bennett4 - plasma alanine aminotransferase (ALT) amount, post-diet HFHS group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means66.45   U/L
Median of the strain means63.89   U/L
SD of the strain means± 26.841
Coefficient of variation (CV)0.4039
Min–max range of strain means28.176   –   140.8   U/L
Mean sample size per strain4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 60424.4584 2877.3552 0.9865 0.489
Residuals 76 221671.5358 2916.7307


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 71.56 37.857   5 16.93 0.529 41.7, 120.9 0.19
CC002/Unc f 63.66 37.45   5 16.748 0.5883 24.3, 113.4 -0.1
CC004/TauUnc f 76.98 38.24   5 17.102 0.4968 29.4, 120.2 0.39
CC006/TauUnc f 82.5 53.47   4 26.737 0.6482 34.2, 158.4 0.6
CC008/GeniUnc f 58.35 27.164   4 13.582 0.4655 42.3, 99.0 -0.3
CC011/Unc f 35.1 9.9114   5 4.4325 0.2824 20.4, 44.1 -1.17
CC012/GeniUnc f 49.65 11.322   5 5.0632 0.228 39.9, 68.7 -0.63
CC019/TauUnc f 54.39 45.132   5 20.184 0.8298 22.5, 133.5 -0.45
CC024/GeniUnc f 59.1 2.5456   2   1.8 0.0431 57.3, 60.9 -0.27
CC027/GeniUnc f 85.38 93.3   5 41.725 1.0928 36.0, 252.0 0.71
CC028/GeniUnc f 90.94 82.94   4 41.47 0.912 25.65, 205.2 0.91
CC030/GeniUnc f 28.176 7.4936   5 3.3512 0.266 19.5, 36.48 -1.43
CC032/GeniUnc f 40.02 10.616   5 4.7478 0.2653 33.0, 57.9 -0.98
CC035/Unc f 43.62 13.095   5 5.8562 0.3002 32.1, 64.8 -0.85
CC036/Unc f 32.19 17.271   5 7.7237 0.5365 20.7, 62.4 -1.28
CC037/TauUnc f 79.65 102.0   5 45.594 1.28 21.9, 259.5 0.49
CC040/TauUnc f 64.12 46.722   4 23.361 0.7286 37.2, 134.1 -0.09
CC041/TauUnc f 41.76 30.445   5 13.615 0.729 23.1, 95.4 -0.92
CC045/GeniUnc f 106.5 97.86   4 48.928 0.9192 48.9, 252.9 1.49
CC059/TauUnc f 69.81 25.915   5 11.59 0.3712 43.2, 108.6 0.13
CC063/Unc f 87.6 44.678   3 25.795 0.51 41.1, 130.2 0.79
CC071/TauUnc f 140.8 140.3   3 81.01 0.9962 53.4, 302.7 2.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 71.56 24.1525598387 119.6639918836 23.4560081164
CC002/Unc f 63.66 24.1525598387 111.7639918836 15.5560081164
CC004/TauUnc f 76.98 24.1525598387 125.0839918836 28.8760081164
CC006/TauUnc f 82.5 27.003382815 136.2818979204 28.7181020796
CC008/GeniUnc f 58.35 27.003382815 112.1318979204 4.5681020796
CC011/Unc f 35.1 24.1525598387 83.2039918836 -13.0039918836
CC012/GeniUnc f 49.65 24.1525598387 97.7539918836 1.5460081164
CC019/TauUnc f 54.39 24.1525598387 102.4939918836 6.2860081164
CC024/GeniUnc f 59.1 38.1885502069 135.1590894492 -16.9590894492
CC027/GeniUnc f 85.38 24.1525598387 133.4839918836 37.2760081164
CC028/GeniUnc f 90.9375 27.003382815 144.7193979204 37.1556020796
CC030/GeniUnc f 28.176 24.1525598387 76.2799918836 -19.9279918836
CC032/GeniUnc f 40.02 24.1525598387 88.1239918836 -8.0839918836
CC035/Unc f 43.62 24.1525598387 91.7239918836 -4.4839918836
CC036/Unc f 32.19 24.1525598387 80.2939918836 -15.9139918836
CC037/TauUnc f 79.65 24.1525598387 127.7539918836 31.5460081164
CC040/TauUnc f 64.125 27.003382815 117.9068979204 10.3431020796
CC041/TauUnc f 41.76 24.1525598387 89.8639918836 -6.3439918836
CC045/GeniUnc f 106.4625 27.003382815 160.2443979204 52.6806020796
CC059/TauUnc f 69.81 24.1525598387 117.9139918836 21.7060081164
CC063/Unc f 87.6 31.1808206746 149.7019864837 25.4980135163
CC071/TauUnc f 140.85 31.1808206746 202.9519864837 78.7480135163




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA