Project measure / variable:   Bennett4   ALT_post_HP

ID, description, units MPD:114735   ALT_post_HP   plasma alanine aminotransferase (ALT) amount, post-diet   [U/L]  HP group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 17-20wks
Procedure metabolic panel
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  STRAIN COMPARISON PLOT
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Bennett4 - plasma alanine aminotransferase (ALT) amount, post-diet HP group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means64.76   U/L
Median of the strain means51.59   U/L
SD of the strain means± 33.947
Coefficient of variation (CV)0.5242
Min–max range of strain means35.362   –   174.5   U/L
Mean sample size per strain4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 93672.0767 4460.5751 2.7879 0.0006
Residuals 78 124798.7925 1599.9845


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 61.98 9.8009   5 4.3831 0.1581 48.6, 72.9 -0.08
CC002/Unc f 51.01 19.259   5 8.613 0.3776 35.4, 80.1 -0.4
CC004/TauUnc f 35.362 6.148   5 2.7495 0.1739 30.0, 45.3 -0.87
CC006/TauUnc f 97.61 22.25   4 11.125 0.2279 66.6, 115.2 0.97
CC008/GeniUnc f 51.45 27.635   4 13.818 0.5371 32.4, 92.4 -0.39
CC011/Unc f 36.644 15.021   5 6.7177 0.4099 23.7, 54.3 -0.83
CC012/GeniUnc f 63.24 15.556   5 6.9568 0.246 46.2, 86.7 -0.04
CC019/TauUnc f 74.38 90.14   5 40.311 1.2118 22.5, 234.8 0.28
CC024/GeniUnc f 55.35 33.305   2   23.55 0.6017 31.8, 78.9 -0.28
CC027/GeniUnc f 118.1 67.43   5 30.156 0.5711 49.2, 196.2 1.57
CC028/GeniUnc f 43.575 10.723   4 5.3615 0.2461 34.2, 54.3 -0.62
CC030/GeniUnc f 38.55 16.67   5 7.4552 0.4324 21.6, 63.9 -0.77
CC032/GeniUnc f 37.92 6.6089   5 2.9556 0.1743 28.5, 46.2 -0.79
CC035/Unc f 83.28 47.515   5 21.249 0.5705 48.6, 164.1 0.55
CC036/Unc f 36.975 8.2427   4 4.1214 0.2229 29.7, 44.7 -0.82
CC037/TauUnc f 51.72 30.865   5 13.803 0.5968 21.0, 102.6 -0.38
CC040/TauUnc f 108.4 89.53   5 40.04 0.8263 28.8, 235.5 1.29
CC041/TauUnc f 64.14 39.311   5 17.58 0.6129 27.6, 124.2 -0.02
CC045/GeniUnc f 48.75 6.5142   4 3.2571 0.1336 45.0, 58.5 -0.47
CC059/TauUnc f 46.92 8.9664   5 4.0099 0.1911 39.6, 57.0 -0.53
CC063/Unc f 174.5 72.37   3 41.785 0.4148 123.9, 257.4 3.23
CC071/TauUnc f 44.76 19.302   5 8.6322 0.4312 33.0, 78.9 -0.59


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 61.98 17.8884572779 97.5931827372 26.3668172628
CC002/Unc f 51.01 17.8884572779 86.6231827372 15.3968172628
CC004/TauUnc f 35.362 17.8884572779 70.9751827372 -0.2511827372
CC006/TauUnc f 97.6125 19.999903243 137.4292487478 57.7957512522
CC008/GeniUnc f 51.45 19.999903243 91.2667487478 11.6332512522
CC011/Unc f 36.644 17.8884572779 72.2571827372 1.0308172628
CC012/GeniUnc f 63.24 17.8884572779 98.8531827372 27.6268172628
CC019/TauUnc f 74.38 17.8884572779 109.9931827372 38.7668172628
CC024/GeniUnc f 55.35 28.2841344123 111.6593860887 -0.9593860887
CC027/GeniUnc f 118.08 17.8884572779 153.6931827372 82.4668172628
CC028/GeniUnc f 43.575 19.999903243 83.3917487478 3.7582512522
CC030/GeniUnc f 38.55 17.8884572779 74.1631827372 2.9368172628
CC032/GeniUnc f 37.92 17.8884572779 73.5331827372 2.3068172628
CC035/Unc f 83.28 17.8884572779 118.8931827372 47.6668172628
CC036/Unc f 36.975 19.999903243 76.7917487478 -2.8417487478
CC037/TauUnc f 51.72 17.8884572779 87.3331827372 16.1068172628
CC040/TauUnc f 108.36 17.8884572779 143.9731827372 72.7468172628
CC041/TauUnc f 64.14 17.8884572779 99.7531827372 28.5268172628
CC045/GeniUnc f 48.75 19.999903243 88.5667487478 8.9332512522
CC059/TauUnc f 46.92 17.8884572779 82.5331827372 11.3068172628
CC063/Unc f 174.5 23.0938990422 220.4764212155 128.5235787845
CC071/TauUnc f 44.76 17.8884572779 80.3731827372 9.1468172628




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA