Project measure / variable:   Bennett4   ALT_base_HP

ID, description, units MPD:114733   ALT_base_HP   plasma alanine aminotransferase (ALT) amount, baseline   [U/L]  HP group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 8-11wks
Procedure metabolic panel
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  STRAIN COMPARISON PLOT
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Bennett4 - plasma alanine aminotransferase (ALT) amount, baseline HP group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means80.51   U/L
Median of the strain means71.91   U/L
SD of the strain means± 41.742
Coefficient of variation (CV)0.5184
Min–max range of strain means33.56   –   185.2   U/L
Mean sample size per strain4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 166678.584 7937.0754 1.6538 0.0576
Residuals 79 379155.3508 4799.4348


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 142.2 27.801   5 12.433 0.1955 111.3, 168.9 1.48
CC002/Unc f 78.64 43.302   5 19.365 0.5506 41.4, 138.3 -0.04
CC004/TauUnc f 147.1 177.9   5 79.56 1.2098 59.4, 465.2 1.6
CC006/TauUnc f 185.2 150.9   4 75.43 0.8146 82.8, 407.2 2.51
CC008/GeniUnc f 116.5 76.99   4 38.494 0.6608 59.5, 226.8 0.86
CC011/Unc f 53.22 17.754   5 7.9399 0.3336 38.7, 80.4 -0.65
CC012/GeniUnc f 53.4 13.767   5 6.1569 0.2578 42.9, 75.9 -0.65
CC019/TauUnc f 38.34 13.338   5 5.9649 0.3479 20.7, 57.3 -1.01
CC024/GeniUnc f 52.65 15.91   2   11.25 0.3022 41.4, 63.9 -0.67
CC027/GeniUnc f 63.93 27.632   5 12.358 0.4322 42.3, 105.0 -0.4
CC028/GeniUnc f 45.862 11.24   4 5.62 0.2451 37.2, 61.05 -0.83
CC030/GeniUnc f 33.56 11.231   5 5.0228 0.3347 18.0, 44.4 -1.12
CC032/GeniUnc f 42.06 15.577   5 6.9665 0.3704 28.8, 67.8 -0.92
CC035/Unc f 75.51 52.03   5 23.268 0.689 30.75, 165.0 -0.12
CC036/Unc f 77.2 70.89   5 31.701 0.9182 34.2, 202.4 -0.08
CC037/TauUnc f 34.98 22.365   5 10.002 0.6394 17.4, 70.8 -1.09
CC040/TauUnc f 68.3 23.378   5 10.455 0.3423 31.2, 93.9 -0.29
CC041/TauUnc f 103.0 79.45   5 35.533 0.7718 35.1, 236.2 0.54
CC045/GeniUnc f 88.45 45.113   4 22.557 0.51 30.3, 127.8 0.19
CC059/TauUnc f 131.8 138.5   5 61.96 1.0508 41.4, 372.0 1.23
CC063/Unc f 94.3 35.248   3 20.35 0.3738 73.8, 135.0 0.33
CC071/TauUnc f 45.12 23.824   5 10.654 0.528 24.6, 85.8 -0.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 142.2 30.9820426043 203.8682132152 80.5317867848
CC002/Unc f 78.64 30.9820426043 140.3082132152 16.9717867848
CC004/TauUnc f 147.062 30.9820426043 208.7302132152 85.3937867848
CC006/TauUnc f 185.2 34.6389766725 254.1471584 116.2528416
CC008/GeniUnc f 116.5 34.6389766725 185.4471584 47.5528416
CC011/Unc f 53.22 30.9820426043 114.8882132152 -8.4482132152
CC012/GeniUnc f 53.4 30.9820426043 115.0682132152 -8.2682132152
CC019/TauUnc f 38.34 30.9820426043 100.0082132152 -23.3282132152
CC024/GeniUnc f 52.65 48.986910597 150.1560064964 -44.8560064964
CC027/GeniUnc f 63.93 30.9820426043 125.5982132152 2.2617867848
CC028/GeniUnc f 45.8625 34.6389766725 114.8096584 -23.0846584
CC030/GeniUnc f 33.56 30.9820426043 95.2282132152 -28.1082132152
CC032/GeniUnc f 42.06 30.9820426043 103.7282132152 -19.6082132152
CC035/Unc f 75.51 30.9820426043 137.1782132152 13.8417867848
CC036/Unc f 77.2 30.9820426043 138.8682132152 15.5317867848
CC037/TauUnc f 34.98 30.9820426043 96.6482132152 -26.6882132152
CC040/TauUnc f 68.3 30.9820426043 129.9682132152 6.6317867848
CC041/TauUnc f 102.95 30.9820426043 164.6182132152 41.2817867848
CC045/GeniUnc f 88.45 34.6389766725 157.3971584 19.5028416
CC059/TauUnc f 131.84 30.9820426043 193.5082132152 70.1717867848
CC063/Unc f 94.3 39.9976450127 173.9133209242 14.6866790758
CC071/TauUnc f 45.12 30.9820426043 106.7882132152 -16.5482132152




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA