Project measure / variable:   Auwerx2   intestine_length_HFD

ID, description, units MPD:114670   intestine_length_HFD   intestine length   [cm]  HFD  
Data set, strains Auwerx2   inbred w/CC8   9 strains     sex: both     age: 21wks
Procedure organ dimensions
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  STRAIN COMPARISON PLOT
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Auwerx2 - intestine length HFD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means32.694   cm 33.788   cm
Median of the strain means33.34   cm 35.85   cm
SD of the strain means± 6.4279 ± 7.0693
Coefficient of variation (CV)0.1966 0.2092
Min–max range of strain means22.84   –   41.54   cm 21.92   –   43.0   cm
Mean sample size per strain4.4   mice 3.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.7593 5.7593 1.3828 0.2452
strain 7 2179.6813 311.383 74.7651 < 0.0001
sex:strain 7 141.6435 20.2348 4.8585 0.0003
Residuals 50 208.2408 4.1648


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 33.34 3.8643   5 1.7282 0.1159 27.4, 37.6 0.1
129S1/SvImJ m 35.85 0.91924   2   0.65 0.0256 35.2, 36.5 0.29
A/J f 35.85 0.43589   4 0.21794 0.0122 35.6, 36.5 0.49
A/J m 34.65 0.8226   4 0.4113 0.0237 33.6, 35.6 0.12
C57BL/6J f 31.233 3.4675   3 2.0019 0.111 28.4, 35.1 -0.23
C57BL/6J m 36.4 1.4537   4 0.72687 0.0399 35.1, 38.4 0.37
CAST/EiJ f 22.84 1.031   5 0.46109 0.0451 21.5, 24.2 -1.53
CAST/EiJ m 23.95 0.91924   2   0.65 0.0384 23.3, 24.6 -1.39
DBA/2J f 31.76 2.2865   5 1.0225 0.072 29.8, 35.5 -0.15
DBA/2J m 37.22 2.0813   5 0.93081 0.0559 35.5, 40.4 0.49
NOD/ShiLtJ f 40.5 0.86718   6 0.35402 0.0214 39.8, 41.7 1.21
NOD/ShiLtJ m 40.425 2.9443   4 1.4722 0.0728 37.4, 44.4 0.94
NZO/HlLtJ f 41.54 1.8942   5 0.84711 0.0456 38.4, 43.4 1.38
NZO/HlLtJ m 43.0 0.0   1   0.0 0.0 43.0, 43.0 1.3
PWK/PhJ f 33.45 2.6185   4 1.3093 0.0783 30.6, 36.7 0.12
PWK/PhJ m 30.68 1.4342   5 0.6414 0.0467 29.1, 32.1 -0.44
WSB/EiJ f 23.733 1.1719   3 0.67659 0.0494 22.4, 24.6 -1.39
WSB/EiJ m 21.92 1.5834   5 0.7081 0.0722 19.8, 24.1 -1.68


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 33.34 0.9126682493 35.1731481285 31.5068518715
129S1/SvImJ m 35.85 1.443055208 38.7484616873 32.9515383127
A/J f 35.85 1.0203941232 37.8995219141 33.8004780859
A/J m 34.65 1.0203941232 36.6995219141 32.6004780859
C57BL/6J f 31.2333333333 1.1782496434 33.599917391 28.8667492757
C57BL/6J m 36.4 1.0203941232 38.4495219141 34.3504780859
CAST/EiJ f 22.84 0.9126682493 24.6731481285 21.0068518715
CAST/EiJ m 23.95 1.443055208 26.8484616873 21.0515383127
DBA/2J f 31.76 0.9126682493 33.5931481285 29.9268518715
DBA/2J m 37.22 0.9126682493 39.0531481285 35.3868518715
NOD/ShiLtJ f 40.5 0.8331483128 42.1734276354 38.8265723646
NOD/ShiLtJ m 40.425 1.0203941232 42.4745219141 38.3754780859
PWK/PhJ f 33.45 1.0203941232 35.4995219141 31.4004780859
PWK/PhJ m 30.68 0.9126682493 32.5131481285 28.8468518715
WSB/EiJ f 23.7333333333 1.1782496434 26.099917391 21.3667492757
WSB/EiJ m 21.92 0.9126682493 23.7531481285 20.0868518715


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 34.595 0.8537229742 36.309753059 32.880246941
A/J both 35.25 0.721527604 36.6992308436 33.8007691564
C57BL/6J both 33.8166666667 0.7793388847 35.382014885 32.2513184484
CAST/EiJ both 23.395 0.8537229742 25.109753059 21.680246941
DBA/2J both 34.49 0.6453539081 35.7862314726 33.1937685274
NOD/ShiLtJ both 40.4625 0.6586615743 41.7854607068 39.1395392932
PWK/PhJ both 32.065 0.684501187 33.4398610964 30.6901389036
WSB/EiJ both 22.8266666667 0.7451905051 24.3234258459 21.3299074874




  GWAS USING LINEAR MIXED MODELS