Project measure / variable:   Auwerx2   intestine_length_CD

ID, description, units MPD:114669   intestine_length_CD   intestine length   [cm]  CD  
Data set, strains Auwerx2   inbred w/CC8   9 strains     sex: both     age: 21wks
Procedure organ dimensions
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  STRAIN COMPARISON PLOT
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Auwerx2 - intestine length CD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means33.227   cm 34.542   cm
Median of the strain means34.575   cm 35.72   cm
SD of the strain means± 6.5906 ± 7.4364
Coefficient of variation (CV)0.1984 0.2153
Min–max range of strain means21.75   –   40.743   cm 22.7   –   45.725   cm
Mean sample size per strain4.0   mice 4.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.1453 4.1453 0.5969 0.443
strain 7 1945.5752 277.9393 40.0202 < 0.0001
sex:strain 7 62.7138 8.9591 1.29 0.2722
Residuals 56 388.9188 6.945


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 37.46 2.5511   5 1.1409 0.0681 33.0, 39.4 0.64
129S1/SvImJ m 35.82 1.2696   5 0.5678 0.0354 34.4, 37.2 0.17
A/J f 35.78 0.51672   5 0.23108 0.0144 35.2, 36.5 0.39
A/J m 36.72 1.1054   5 0.49437 0.0301 35.5, 38.4 0.29
C57BL/6J f 33.625 2.6588   4 1.3294 0.0791 31.3, 36.4 0.06
C57BL/6J m 35.16 0.75033   5 0.33556 0.0213 34.3, 36.2 0.08
CAST/EiJ f 23.8 0.0   1   0.0 0.0 23.8, 23.8 -1.43
CAST/EiJ m 23.7 0.65574   3 0.37859 0.0277 23.1, 24.4 -1.46
DBA/2J f 34.575 2.1109   4 1.0554 0.0611 32.2, 36.5 0.2
DBA/2J m 35.72 4.2464   5 1.8991 0.1189 32.3, 40.4 0.16
NOD/ShiLtJ f 40.743 4.8754   7 1.8427 0.1197 34.9, 49.6 1.14
NOD/ShiLtJ m 41.66 2.1466   5 0.96 0.0515 38.6, 43.4 0.96
NZO/HlLtJ f 39.667 1.2055   3 0.69602 0.0304 38.4, 40.8 0.98
NZO/HlLtJ m 45.725 1.9687   4 0.98436 0.0431 43.2, 47.8 1.5
PWK/PhJ f 31.64 2.9382   5 1.314 0.0929 27.4, 34.5 -0.24
PWK/PhJ m 33.675 1.6194   4 0.80971 0.0481 32.8, 36.1 -0.12
WSB/EiJ f 21.75 1.2021   2   0.85 0.0553 20.9, 22.6 -1.74
WSB/EiJ m 22.7 2.7142   4 1.3571 0.1196 18.9, 24.8 -1.59


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 37.46 1.1785566377 39.8209326461 35.0990673539
129S1/SvImJ m 35.82 1.1785566377 38.1809326461 33.4590673539
A/J f 35.78 1.1785566377 38.1409326461 33.4190673539
A/J m 36.72 1.1785566377 39.0809326461 34.3590673539
C57BL/6J f 33.625 1.3176663786 36.2646029435 30.9853970565
C57BL/6J m 35.16 1.1785566377 37.5209326461 32.7990673539
DBA/2J f 34.575 1.3176663786 37.2146029435 31.9353970565
DBA/2J m 35.72 1.1785566377 38.0809326461 33.3590673539
NOD/ShiLtJ f 40.7428571429 0.9960621568 42.7382094139 38.7475048718
NOD/ShiLtJ m 41.66 1.1785566377 44.0209326461 39.2990673539
NZO/HlLtJ f 39.6666666667 1.5215100768 42.7146176067 36.6187157267
NZO/HlLtJ m 45.725 1.3176663786 48.3646029435 43.0853970565
PWK/PhJ f 31.64 1.1785566377 34.0009326461 29.2790673539
PWK/PhJ m 33.675 1.3176663786 36.3146029435 31.0353970565
WSB/EiJ f 21.75 1.8634616633 25.482962282 18.017037718
WSB/EiJ m 22.7 1.3176663786 25.3396029435 20.0603970565


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 36.64 0.8333653905 38.309431484 34.970568516
A/J both 36.25 0.8333653905 37.919431484 34.580568516
C57BL/6J both 34.3925 0.8839174783 36.1631994846 32.6218005154
DBA/2J both 35.1475 0.8839174783 36.9181994846 33.3768005154
NOD/ShiLtJ both 41.2014285714 0.771546429 42.7470217945 39.6558353483
NZO/HlLtJ both 42.6958333333 1.0063843201 44.7118633822 40.6798032844
PWK/PhJ both 32.6575 0.8839174783 34.4281994846 30.8868005154
WSB/EiJ both 22.225 1.1411325576 24.510963205 19.939036795




  GWAS USING LINEAR MIXED MODELS