Project measure / variable:   Auwerx2   spleen_wt_CD

ID, description, units MPD:114663   spleen_wt_CD   spleen weight   [g]  CD  
Data set, strains Auwerx2   inbred w/CC8   9 strains     sex: both     age: 21wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Auwerx2 - spleen weight CD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.06007   g 0.06023   g
Median of the strain means0.05568   g 0.0565   g
SD of the strain means± 0.03721 ± 0.03221
Coefficient of variation (CV)0.6195 0.5347
Min–max range of strain means0.01293   –   0.14235   g 0.01916   –   0.12632   g
Mean sample size per strain4.4   mice 4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0 0.0 0.0218 0.8831
strain 7 0.0695 0.0099 21.7302 < 0.0001
sex:strain 7 0.0014 0.0002 0.4441 0.8705
Residuals 63 0.0288 0.0005


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.05568 0.0069334   5 0.00310071 0.1245 0.0454, 0.0627 -0.12
129S1/SvImJ m 0.04296 0.00625803   5 0.00279868 0.1457 0.035, 0.0508 -0.54
A/J f 0.04878 0.0209   5 0.00934475 0.4284 0.012, 0.0626 -0.3
A/J m 0.0516 0.00270647   5 0.00121037 0.0525 0.0488, 0.0561 -0.27
C57BL/6J f 0.06838 0.01016   5 0.00454251 0.1485 0.0586, 0.0818 0.22
C57BL/6J m 0.06866 0.00730534   5 0.00326705 0.1064 0.0592, 0.0794 0.26
CAST/EiJ f 0.0232 0.0   1   0.0 0.0 0.0232, 0.0232 -0.99
CAST/EiJ m 0.0252 0.00589237   3 0.00340196 0.2338 0.0216, 0.032 -1.09
DBA/2J f 0.07798 0.01314   5 0.00587566 0.1685 0.0664, 0.0982 0.48
DBA/2J m 0.0818 0.00635453   5 0.00284183 0.0777 0.0719, 0.0883 0.67
NOD/ShiLtJ f 0.0643 0.00985157   7 0.00372354 0.1532 0.0475, 0.0762 0.11
NOD/ShiLtJ m 0.06986 0.00486857   5 0.00217729 0.0697 0.0639, 0.0774 0.3
NZO/HlLtJ f 0.14235 0.00710375   4 0.00355188 0.0499 0.1351, 0.1505 2.21
NZO/HlLtJ m 0.12632 0.07645   5 0.03419 0.6052 0.0761, 0.2616 2.05
PWK/PhJ f 0.047 0.00796398   5 0.0035616 0.1694 0.0344, 0.056 -0.35
PWK/PhJ m 0.0565 0.00794984   5 0.00355528 0.1407 0.05, 0.0699 -0.12
WSB/EiJ f 0.01293 0.00245832   3 0.00141931 0.1901 0.011, 0.0157 -1.27
WSB/EiJ m 0.01916 0.01068   5 0.0047773 0.5575 0.0124, 0.0381 -1.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.05568 0.0095592097 0.0747825564 0.0365774436
129S1/SvImJ m 0.04296 0.0095592097 0.0620625564 0.0238574436
A/J f 0.04878 0.0095592097 0.0678825564 0.0296774436
A/J m 0.0516 0.0095592097 0.0707025564 0.0324974436
C57BL/6J f 0.06838 0.0095592097 0.0874825564 0.0492774436
C57BL/6J m 0.06866 0.0095592097 0.0877625564 0.0495574436
DBA/2J f 0.07798 0.0095592097 0.0970825564 0.0588774436
DBA/2J m 0.0818 0.0095592097 0.1009025564 0.0626974436
NOD/ShiLtJ f 0.0643 0.0080790068 0.0804446068 0.0481553932
NOD/ShiLtJ m 0.06986 0.0095592097 0.0889625564 0.0507574436
NZO/HlLtJ f 0.14235 0.0106875214 0.1637073073 0.1209926927
NZO/HlLtJ m 0.12632 0.0095592097 0.1454225564 0.1072174436
PWK/PhJ f 0.047 0.0095592097 0.0661025564 0.0278974436
PWK/PhJ m 0.0565 0.0095592097 0.0756025564 0.0373974436
WSB/EiJ f 0.0129333333 0.0123408867 0.0375946276 -0.0117279609
WSB/EiJ m 0.01916 0.0095592097 0.0382625564 5.74436e-05


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.04932 0.006759382 0.0628275472 0.0358124528
A/J both 0.05019 0.006759382 0.0636975472 0.0366824528
C57BL/6J both 0.06852 0.006759382 0.0820275472 0.0550124528
DBA/2J both 0.07989 0.006759382 0.0933975472 0.0663824528
NOD/ShiLtJ both 0.06708 0.0062579718 0.0795855587 0.0545744413
NZO/HlLtJ both 0.134335 0.0071694073 0.1486619173 0.1200080827
PWK/PhJ both 0.05175 0.006759382 0.0652575472 0.0382424528
WSB/EiJ both 0.0160466667 0.0078050621 0.0316438386 0.0004494947




  GWAS USING LINEAR MIXED MODELS