Project measure / variable:   Auwerx2   cecum_wt_HFD

ID, description, units MPD:114652   cecum_wt_HFD   cecum weight   [g]  HFD  
Data set, strains Auwerx2   inbred w/CC8   9 strains     sex: both     age: 21wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Auwerx2 - cecum weight HFD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.14095   g 0.13362   g
Median of the strain means0.13212   g 0.1237   g
SD of the strain means± 0.04557 ± 0.04354
Coefficient of variation (CV)0.3233 0.3258
Min–max range of strain means0.0764   –   0.20202   g 0.07892   –   0.20466   g
Mean sample size per strain4.4   mice 3.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0 0.0 0.0044 0.9476
strain 7 0.1193 0.017 25.2151 < 0.0001
sex:strain 7 0.014 0.002 2.9547 0.011
Residuals 52 0.0351 0.0007


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.1308 0.04509   5 0.02017 0.3448 0.0542, 0.1711 -0.22
129S1/SvImJ m 0.1149 0.00678823   2   0.0048 0.0591 0.1101, 0.1197 -0.43
A/J f 0.17997 0.02129   4 0.01064 0.1183 0.1525, 0.2038 0.86
A/J m 0.1357 0.01187   5 0.0053099 0.0875 0.121, 0.1471 0.05
C57BL/6J f 0.1654 0.01192   3 0.00688259 0.0721 0.1528, 0.1765 0.54
C57BL/6J m 0.2005 0.01984   4 0.0099185 0.0989 0.1726, 0.2172 1.54
CAST/EiJ f 0.0764 0.01723   5 0.00770409 0.2255 0.055, 0.0929 -1.42
CAST/EiJ m 0.10685 0.01195   2   0.00845 0.1118 0.0984, 0.1153 -0.61
DBA/2J f 0.10784 0.01538   5 0.00687718 0.1426 0.0917, 0.1279 -0.73
DBA/2J m 0.14146 0.0305   5 0.01364 0.2156 0.0997, 0.1772 0.18
NOD/ShiLtJ f 0.20202 0.02334   6 0.0095272 0.1155 0.1694, 0.2322 1.34
NOD/ShiLtJ m 0.20466 0.03698   5 0.01654 0.1807 0.164, 0.2445 1.63
NZO/HlLtJ f 0.18844 0.02143   5 0.00958575 0.1137 0.1683, 0.2233 1.04
NZO/HlLtJ m 0.1237 0.0   1   0.0 0.0 0.1237, 0.1237 -0.23
PWK/PhJ f 0.13212 0.02061   4 0.01031 0.156 0.1045, 0.1511 -0.19
PWK/PhJ m 0.0959 0.01687   5 0.0075452 0.1759 0.0738, 0.1162 -0.87
WSB/EiJ f 0.08557 0.02783   3 0.01607 0.3253 0.0548, 0.109 -1.22
WSB/EiJ m 0.07892 0.03679   5 0.01645 0.4661 0.0178, 0.1103 -1.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.1308 0.0116248638 0.1541269957 0.1074730043
129S1/SvImJ m 0.1149 0.0183805235 0.1517832188 0.0780167812
A/J f 0.179975 0.0129969928 0.2060553741 0.1538946259
A/J m 0.1357 0.0116248638 0.1590269957 0.1123730043
C57BL/6J f 0.1654 0.0150076346 0.195515022 0.135284978
C57BL/6J m 0.2005 0.0129969928 0.2265803741 0.1744196259
CAST/EiJ f 0.0764 0.0116248638 0.0997269957 0.0530730043
CAST/EiJ m 0.10685 0.0183805235 0.1437332188 0.0699667812
DBA/2J f 0.10784 0.0116248638 0.1311669957 0.0845130043
DBA/2J m 0.14146 0.0116248638 0.1647869957 0.1181330043
NOD/ShiLtJ f 0.2020166667 0.0106120002 0.2233112029 0.1807221304
NOD/ShiLtJ m 0.20466 0.0116248638 0.2279869957 0.1813330043
PWK/PhJ f 0.132125 0.0129969928 0.1582053741 0.1060446259
PWK/PhJ m 0.0959 0.0116248638 0.1192269957 0.0725730043
WSB/EiJ f 0.0855666667 0.0150076346 0.1156816887 0.0554516447
WSB/EiJ m 0.07892 0.0116248638 0.1022469957 0.0555930043


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.12285 0.0108740643 0.1446704065 0.1010295935
A/J both 0.1578375 0.0087186478 0.1753327468 0.1403422532
C57BL/6J both 0.18295 0.0099266172 0.2028692147 0.1630307853
CAST/EiJ both 0.091625 0.0108740643 0.1134454065 0.0698045935
DBA/2J both 0.12465 0.00822002 0.1411446769 0.1081553231
NOD/ShiLtJ both 0.2033383333 0.00787007 0.2191307841 0.1875458826
PWK/PhJ both 0.1140125 0.0087186478 0.1315077468 0.0965172532
WSB/EiJ both 0.0822433333 0.0094916615 0.1012897456 0.0631969211




  GWAS USING LINEAR MIXED MODELS