MPD: Project measure / variable: Kumar3 Sex

Project measure / variable: Kumar3 Sex_numeric

ID, description, units	MPD:112911 Sex_numeric Sex_numeric informational
Data set, strains	Kumar3 inbred w/CC8 62 strains sex: both
Procedure	None
Ontology mappings

STRAIN COMPARISON PLOT

Dimensions Width: px Height: px

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Visualization Options Least squares means Alphabetical order Strains on X-axis Individual points

Kumar3 - Sex_numeric

MEASURE SUMMARY

Measure Summary	Female	Male
Number of strains tested	62 strains	62 strains
Mean of the strain means	0.0 None	1.0 None
Median of the strain means	0.0 None	1.0 None
SD of the strain means	± 0.0	± 0.0
Coefficient of variation (CV)	0.0	0.0
Min–max range of strain means	0.0 – 0.0 None	1.0 – 1.0 None
Mean sample size per strain	19.2 mice	20.4 mice

ANOVA, Q-Q NORMALITY ASSESSMENT

ANOVA summary

Factor	DF	Sum of squares	Mean sum of squares	F value	p value (Pr>F)
sex	1	613.6777	613.6777	1.504198493e+30	< 0.0001
strain	61	0.0	0.0	1.312	0.0545
sex:strain	61	0.0	0.0	0.6955	0.965
Residuals	2333	0.0	0.0

Q-Q normality assessment based on residuals

STRAIN MEANS (UNADJUSTED)

Strain	Sex	Mean	N mice	CV	Min, Max
129P3/J	f	0.0	19	None
129P3/J	m	1.0	10	0.0	1.0, 1.0
129S1/SvImJ	f	0.0	9	None
129S1/SvImJ	m	1.0	18	0.0	1.0, 1.0
129X1/SvJ	f	0.0	6	None
129X1/SvJ	m	1.0	8	0.0	1.0, 1.0
A/J	f	0.0	14	None
A/J	m	1.0	12	0.0	1.0, 1.0
AKR/J	f	0.0	9	None
AKR/J	m	1.0	10	0.0	1.0, 1.0
B6129PF1/J	f	0.0	20	None
B6129PF1/J	m	1.0	13	0.0	1.0, 1.0
B6129SF1/J	f	0.0	9	None
B6129SF1/J	m	1.0	19	0.0	1.0, 1.0
B6AF1/J	f	0.0	18	None
B6AF1/J	m	1.0	25	0.0	1.0, 1.0
B6C3F1/J	f	0.0	24	None
B6C3F1/J	m	1.0	12	0.0	1.0, 1.0
B6CBAF1/J	f	0.0	9	None
B6CBAF1/J	m	1.0	9	0.0	1.0, 1.0
B6D2F1/J	f	0.0	13	None
B6D2F1/J	m	1.0	11	0.0	1.0, 1.0
B6SJLF1/J	f	0.0	27	None
B6SJLF1/J	m	1.0	6	0.0	1.0, 1.0
BALB/cByJ	f	0.0	8	None
BALB/cByJ	m	1.0	13	0.0	1.0, 1.0
BALB/cJ	f	0.0	18	None
BALB/cJ	m	1.0	25	0.0	1.0, 1.0
BTBR T⁺ Itpr3^tf/J	f	0.0	23	None
BTBR T⁺ Itpr3^tf/J	m	1.0	38	0.0	1.0, 1.0
BUB/BnJ	f	0.0	8	None
BUB/BnJ	m	1.0	8	0.0	1.0, 1.0
C3HeB/FeJ	f	0.0	6	None
C3HeB/FeJ	m	1.0	8	0.0	1.0, 1.0
C3H/HeJ	f	0.0	16	None
C3H/HeJ	m	1.0	12	0.0	1.0, 1.0
C3H/HeOuJ	f	0.0	15	None
C3H/HeOuJ	m	1.0	8	0.0	1.0, 1.0
C57BL/10SnJ	f	0.0	9	None
C57BL/10SnJ	m	1.0	14	0.0	1.0, 1.0
C57BL/6J	f	0.0	242	None
C57BL/6J	m	1.0	394	0.0	1.0, 1.0
C57BL/6NJ	f	0.0	212	None
C57BL/6NJ	m	1.0	185	0.0	1.0, 1.0
C57BLKS/J	f	0.0	11	None
C57BLKS/J	m	1.0	19	0.0	1.0, 1.0
C57BR/cdJ	f	0.0	13	None
C57BR/cdJ	m	1.0	6	0.0	1.0, 1.0
C57L/J	f	0.0	13	None
C57L/J	m	1.0	11	0.0	1.0, 1.0
C58/J	f	0.0	8	None
C58/J	m	1.0	8	0.0	1.0, 1.0
CAF1/J	f	0.0	10	None
CAF1/J	m	1.0	12	0.0	1.0, 1.0
CAST/EiJ	f	0.0	31	None
CAST/EiJ	m	1.0	14	0.0	1.0, 1.0
CB6F1/J	f	0.0	8	None
CB6F1/J	m	1.0	18	0.0	1.0, 1.0
CBA/CaJ	f	0.0	17	None
CBA/CaJ	m	1.0	17	0.0	1.0, 1.0
CBA/J	f	0.0	10	None
CBA/J	m	1.0	9	0.0	1.0, 1.0
CByB6F1/J	f	0.0	8	None
CByB6F1/J	m	1.0	17	0.0	1.0, 1.0
CZECHII/EiJ	f	0.0	8	None
CZECHII/EiJ	m	1.0	5	0.0	1.0, 1.0
DBA/1J	f	0.0	15	None
DBA/1J	m	1.0	19	0.0	1.0, 1.0
DBA/2J	f	0.0	9	None
DBA/2J	m	1.0	13	0.0	1.0, 1.0
FVB/NJ	f	0.0	15	None
FVB/NJ	m	1.0	6	0.0	1.0, 1.0
I/LnJ	f	0.0	8	None
I/LnJ	m	1.0	7	0.0	1.0, 1.0
KK/HlJ	f	0.0	8	None
KK/HlJ	m	1.0	8	0.0	1.0, 1.0
LG/J	f	0.0	8	None
LG/J	m	1.0	7	0.0	1.0, 1.0
LP/J	f	0.0	15	None
LP/J	m	1.0	27	0.0	1.0, 1.0
MA/MyJ	f	0.0	8	None
MA/MyJ	m	1.0	8	0.0	1.0, 1.0
MOLF/EiJ	f	0.0	8	None
MOLF/EiJ	m	1.0	5	0.0	1.0, 1.0
MRL/MpJ	f	0.0	10	None
MRL/MpJ	m	1.0	9	0.0	1.0, 1.0
MSM/MsJ	f	0.0	8	None
MSM/MsJ	m	1.0	3	0.0	1.0, 1.0
NOD/ShiLtJ	f	0.0	16	None
NOD/ShiLtJ	m	1.0	13	0.0	1.0, 1.0
NON/ShiLtJ	f	0.0	14	None
NON/ShiLtJ	m	1.0	13	0.0	1.0, 1.0
NOR/LtJ	f	0.0	10	None
NOR/LtJ	m	1.0	7	0.0	1.0, 1.0
NU/J	f	0.0	5	None
NU/J	m	1.0	5	0.0	1.0, 1.0
NZB/BlNJ	f	0.0	16	None
NZB/BlNJ	m	1.0	6	0.0	1.0, 1.0
NZBWF1/J	f	0.0	10	None
NZBWF1/J	m	1.0	17	0.0	1.0, 1.0
NZO/HlLtJ	f	0.0	8	None
NZO/HlLtJ	m	1.0	7	0.0	1.0, 1.0
NZW/LacJ	f	0.0	16	None
NZW/LacJ	m	1.0	16	0.0	1.0, 1.0
PL/J	f	0.0	8	None
PL/J	m	1.0	8	0.0	1.0, 1.0
PWD/PhJ	f	0.0	5	None
PWD/PhJ	m	1.0	7	0.0	1.0, 1.0
PWK/PhJ	f	0.0	7	None
PWK/PhJ	m	1.0	5	0.0	1.0, 1.0
RIIIS/J	f	0.0	7	None
RIIIS/J	m	1.0	7	0.0	1.0, 1.0
SEA/GnJ	f	0.0	8	None
SEA/GnJ	m	1.0	7	0.0	1.0, 1.0
SJL/J	f	0.0	38	None
SJL/J	m	1.0	6	0.0	1.0, 1.0
SM/J	f	0.0	8	None
SM/J	m	1.0	8	0.0	1.0, 1.0
SWR/J	f	0.0	15	None
SWR/J	m	1.0	7	0.0	1.0, 1.0
TALLYHO/JngJ	f	0.0	9	None
TALLYHO/JngJ	m	1.0	13	0.0	1.0, 1.0
WSB/EiJ	f	0.0	8	None
WSB/EiJ	m	1.0	8	0.0	1.0, 1.0

LEAST SQUARES MEANS (MODEL-ADJUSTED)

Strain	Sex	Mean	UpperCL	LowerCL
129P3/J	f	0.0	0.0	0.0
129P3/J	m	1.0	1.0	1.0
129S1/SvImJ	f	0.0	0.0	0.0
129S1/SvImJ	m	1.0	1.0	1.0
129X1/SvJ	f	0.0	0.0	0.0
129X1/SvJ	m	1.0	1.0	1.0
A/J	f	0.0	0.0	0.0
A/J	m	1.0	1.0	1.0
AKR/J	f	0.0	0.0	0.0
AKR/J	m	1.0	1.0	1.0
B6129PF1/J	f	0.0	0.0	0.0
B6129PF1/J	m	1.0	1.0	1.0
B6129SF1/J	f	0.0	0.0	0.0
B6129SF1/J	m	1.0	1.0	1.0
B6AF1/J	f	0.0	0.0	0.0
B6AF1/J	m	1.0	1.0	1.0
B6C3F1/J	f	0.0	0.0	0.0
B6C3F1/J	m	1.0	1.0	1.0
B6CBAF1/J	f	0.0	0.0	0.0
B6CBAF1/J	m	1.0	1.0	1.0
B6D2F1/J	f	0.0	0.0	0.0
B6D2F1/J	m	1.0	1.0	1.0
B6SJLF1/J	f	0.0	0.0	0.0
B6SJLF1/J	m	1.0	1.0	1.0
BALB/cByJ	f	0.0	0.0	0.0
BALB/cByJ	m	1.0	1.0	1.0
BALB/cJ	f	0.0	0.0	0.0
BALB/cJ	m	1.0	1.0	1.0
BTBR T⁺ Itpr3^tf/J	f	0.0	0.0	0.0
BTBR T⁺ Itpr3^tf/J	m	1.0	1.0	1.0
BUB/BnJ	f	0.0	0.0	0.0
BUB/BnJ	m	1.0	1.0	1.0
C3HeB/FeJ	f	0.0	0.0	0.0
C3HeB/FeJ	m	1.0	1.0	1.0
C3H/HeJ	f	0.0	0.0	0.0
C3H/HeJ	m	1.0	1.0	1.0
C3H/HeOuJ	f	0.0	0.0	0.0
C3H/HeOuJ	m	1.0	1.0	1.0
C57BL/10SnJ	f	0.0	0.0	0.0
C57BL/10SnJ	m	1.0	1.0	1.0
C57BL/6J	f	0.0	0.0	0.0
C57BL/6J	m	1.0	1.0	1.0
C57BL/6NJ	f	0.0	0.0	0.0
C57BL/6NJ	m	1.0	1.0	1.0
C57BLKS/J	f	0.0	0.0	0.0
C57BLKS/J	m	1.0	1.0	1.0
C57BR/cdJ	f	0.0	0.0	0.0
C57BR/cdJ	m	1.0	1.0	1.0
C57L/J	f	0.0	0.0	0.0
C57L/J	m	1.0	1.0	1.0
C58/J	f	0.0	0.0	0.0
C58/J	m	1.0	1.0	1.0
CAF1/J	f	0.0	0.0	0.0
CAF1/J	m	1.0	1.0	1.0
CAST/EiJ	f	0.0	0.0	0.0
CAST/EiJ	m	1.0	1.0	1.0
CB6F1/J	f	0.0	0.0	0.0
CB6F1/J	m	1.0	1.0	1.0
CBA/CaJ	f	0.0	0.0	0.0
CBA/CaJ	m	1.0	1.0	1.0
CBA/J	f	0.0	0.0	0.0
CBA/J	m	1.0	1.0	1.0
CByB6F1/J	f	0.0	0.0	0.0
CByB6F1/J	m	1.0	1.0	1.0
CZECHII/EiJ	f	0.0	0.0	0.0
CZECHII/EiJ	m	1.0	1.0	1.0
DBA/1J	f	0.0	0.0	0.0
DBA/1J	m	1.0	1.0	1.0
DBA/2J	f	0.0	0.0	0.0
DBA/2J	m	1.0	1.0	1.0
FVB/NJ	f	0.0	0.0	0.0
FVB/NJ	m	1.0	1.0	1.0
I/LnJ	f	0.0	0.0	0.0
I/LnJ	m	1.0	1.0	1.0
KK/HlJ	f	0.0	0.0	0.0
KK/HlJ	m	1.0	1.0	1.0
LG/J	f	0.0	0.0	0.0
LG/J	m	1.0	1.0	1.0
LP/J	f	0.0	0.0	0.0
LP/J	m	1.0	1.0	1.0
MA/MyJ	f	0.0	0.0	0.0
MA/MyJ	m	1.0	1.0	1.0
MOLF/EiJ	f	0.0	0.0	0.0
MOLF/EiJ	m	1.0	1.0	1.0
MRL/MpJ	f	0.0	0.0	0.0
MRL/MpJ	m	1.0	1.0	1.0
MSM/MsJ	f	0.0	0.0	0.0
MSM/MsJ	m	1.0	1.0	1.0
NOD/ShiLtJ	f	0.0	0.0	0.0
NOD/ShiLtJ	m	1.0	1.0	1.0
NON/ShiLtJ	f	0.0	0.0	0.0
NON/ShiLtJ	m	1.0	1.0	1.0
NOR/LtJ	f	0.0	0.0	0.0
NOR/LtJ	m	1.0	1.0	1.0
NU/J	f	0.0	0.0	0.0
NU/J	m	1.0	1.0	1.0
NZB/BlNJ	f	0.0	0.0	0.0
NZB/BlNJ	m	1.0	1.0	1.0
NZBWF1/J	f	0.0	0.0	0.0
NZBWF1/J	m	1.0	1.0	1.0
NZO/HlLtJ	f	0.0	0.0	0.0
NZO/HlLtJ	m	1.0	1.0	1.0
NZW/LacJ	f	0.0	0.0	0.0
NZW/LacJ	m	1.0	1.0	1.0
PL/J	f	0.0	0.0	0.0
PL/J	m	1.0	1.0	1.0
PWD/PhJ	f	0.0	0.0	0.0
PWD/PhJ	m	1.0	1.0	1.0
PWK/PhJ	f	0.0	0.0	0.0
PWK/PhJ	m	1.0	1.0	1.0
RIIIS/J	f	0.0	0.0	0.0
RIIIS/J	m	1.0	1.0	1.0
SEA/GnJ	f	0.0	0.0	0.0
SEA/GnJ	m	1.0	1.0	1.0
SJL/J	f	0.0	0.0	0.0
SJL/J	m	1.0	1.0	1.0
SM/J	f	0.0	0.0	0.0
SM/J	m	1.0	1.0	1.0
SWR/J	f	0.0	0.0	0.0
SWR/J	m	1.0	1.0	1.0
TALLYHO/JngJ	f	0.0	0.0	0.0
TALLYHO/JngJ	m	1.0	1.0	1.0
WSB/EiJ	f	0.0	0.0	0.0
WSB/EiJ	m	1.0	1.0	1.0

LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED

Strain	Sex	Mean	UpperCL	LowerCL
129P3/J	both	0.5	0.5	0.5
129S1/SvImJ	both	0.5	0.5	0.5
129X1/SvJ	both	0.5	0.5	0.5
A/J	both	0.5	0.5	0.5
AKR/J	both	0.5	0.5	0.5
B6129PF1/J	both	0.5	0.5	0.5
B6129SF1/J	both	0.5	0.5	0.5
B6AF1/J	both	0.5	0.5	0.5
B6C3F1/J	both	0.5	0.5	0.5
B6CBAF1/J	both	0.5	0.5	0.5
B6D2F1/J	both	0.5	0.5	0.5
B6SJLF1/J	both	0.5	0.5	0.5
BALB/cByJ	both	0.5	0.5	0.5
BALB/cJ	both	0.5	0.5	0.5
BTBR T⁺ Itpr3^tf/J	both	0.5	0.5	0.5
BUB/BnJ	both	0.5	0.5	0.5
C3HeB/FeJ	both	0.5	0.5	0.5
C3H/HeJ	both	0.5	0.5	0.5
C3H/HeOuJ	both	0.5	0.5	0.5
C57BL/10SnJ	both	0.5	0.5	0.5
C57BL/6J	both	0.5	0.5	0.5
C57BL/6NJ	both	0.5	0.5	0.5
C57BLKS/J	both	0.5	0.5	0.5
C57BR/cdJ	both	0.5	0.5	0.5
C57L/J	both	0.5	0.5	0.5
C58/J	both	0.5	0.5	0.5
CAF1/J	both	0.5	0.5	0.5
CAST/EiJ	both	0.5	0.5	0.5
CB6F1/J	both	0.5	0.5	0.5
CBA/CaJ	both	0.5	0.5	0.5
CBA/J	both	0.5	0.5	0.5
CByB6F1/J	both	0.5	0.5	0.5
CZECHII/EiJ	both	0.5	0.5	0.5
DBA/1J	both	0.5	0.5	0.5
DBA/2J	both	0.5	0.5	0.5
FVB/NJ	both	0.5	0.5	0.5
I/LnJ	both	0.5	0.5	0.5
KK/HlJ	both	0.5	0.5	0.5
LG/J	both	0.5	0.5	0.5
LP/J	both	0.5	0.5	0.5
MA/MyJ	both	0.5	0.5	0.5
MOLF/EiJ	both	0.5	0.5	0.5
MRL/MpJ	both	0.5	0.5	0.5
MSM/MsJ	both	0.5	0.5	0.5
NOD/ShiLtJ	both	0.5	0.5	0.5
NON/ShiLtJ	both	0.5	0.5	0.5
NOR/LtJ	both	0.5	0.5	0.5
NU/J	both	0.5	0.5	0.5
NZB/BlNJ	both	0.5	0.5	0.5
NZBWF1/J	both	0.5	0.5	0.5
NZO/HlLtJ	both	0.5	0.5	0.5
NZW/LacJ	both	0.5	0.5	0.5
PL/J	both	0.5	0.5	0.5
PWD/PhJ	both	0.5	0.5	0.5
PWK/PhJ	both	0.5	0.5	0.5
RIIIS/J	both	0.5	0.5	0.5
SEA/GnJ	both	0.5	0.5	0.5
SJL/J	both	0.5	0.5	0.5
SM/J	both	0.5	0.5	0.5
SWR/J	both	0.5	0.5	0.5
TALLYHO/JngJ	both	0.5	0.5	0.5
WSB/EiJ	both	0.5	0.5	0.5

INDIVIDUAL ANIMAL VALUES

Click here to view individual animal values

GWAS USING LINEAR MIXED MODELS