Project measure / variable:   CSNA03   trial_init_latency_cc_rev_Binghamton

ID, description, units MPD:112904   trial_init_latency_cc_rev_Binghamton   mean latency (across trials) between illumination of central hole and initiation of trial (reversal learning assay), CC   [centiseconds/n]  reversal  
Data set, strains CSNA03   CC w/par   18 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - mean latency (across trials) between illumination of central hole and initiation of trial (reversal learning assay), CC reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested17 strains18 strains
Mean of the strain means522.6   centiseconds/n 464.6   centiseconds/n
Median of the strain means543.1   centiseconds/n 437.0   centiseconds/n
SD of the strain means± 294.2 ± 202.3
Coefficient of variation (CV)0.563 0.4354
Min–max range of strain means126.5   –   1107.0   centiseconds/n 141.9   –   822.2   centiseconds/n
Mean sample size per strain4.6   mice 4.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 152250.8802 152250.8802 0.9362 0.3353
strain 16 5992721.0023 374545.0626 2.3032 0.0057
sex:strain 16 3366978.8428 210436.1777 1.2941 0.2128
Residuals 115 18701068.5255 162617.9872


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 601.4 321.8   7 121.6 0.5351 215.3, 1005.0 0.27
129S1/SvImJ m 788.2 199.9   5 89.38 0.2536 598.1, 1014.0 1.6
A/J f 1107.0 274.7   6 112.2 0.2482 581.6, 1303.0 1.99
A/J m 486.4 435.8   6 177.9 0.8961 105.7, 1234.0 0.11
C57BL/6J f 476.6 354.1   6 144.6 0.743 144.7, 1097.0 -0.16
C57BL/6J m 788.6 581.4   6 237.3 0.7373 249.7, 1919.0 1.6
CAST/EiJ f 401.8 159.6   7 60.33 0.3972 173.8, 647.7 -0.41
CAST/EiJ m 321.9 71.25   4 35.625 0.2213 266.9, 421.0 -0.71
CC002/UncJ f 975.2 876.5   2   619.7 0.8987 355.5, 1595.0 1.54
CC002/UncJ m 357.6 202.4   2   143.1 0.5662 214.4, 500.7 -0.53
CC004/TauUncJ f 140.7 108.4   4 54.22 0.7706 72.17, 302.1 -1.3
CC004/TauUncJ m 532.2 744.2   7 281.3 1.3983 153.9, 2191.0 0.33
CC006/TauUncJ f 155.8 81.01   3 46.769 0.5199 62.46, 207.5 -1.25
CC006/TauUncJ m 257.0 281.9   3 162.7 1.0969 81.22, 582.1 -1.03
CC011/UncJ f 631.8 538.8   3 311.0 0.8527 145.6, 1211.0 0.37
CC011/UncJ m 387.6 149.3   2   105.6 0.3853 282.0, 493.2 -0.38
CC012/GeniUncJ f 557.5 264.0   3 152.4 0.4735 278.4, 803.2 0.12
CC012/GeniUncJ m 548.1 532.8   3 307.6 0.9722 140.4, 1151.0 0.41
CC025/GeniUncJ m 510.1 394.7   2   279.1 0.7738 231.0, 789.2 0.22
CC028/GeniUncJ f 346.1 317.1   3 183.1 0.916 116.6, 707.9 -0.6
CC028/GeniUncJ m 304.8 114.2   3 65.91 0.3746 206.5, 430.0 -0.79
CC032/GeniUncJ f 378.5 329.5   2   233.0 0.8706 145.5, 611.5 -0.49
CC032/GeniUncJ m 304.7 207.4   3 119.8 0.6808 108.9, 522.1 -0.79
CC041/TauUncJ f 818.8 503.1   6 205.4 0.6145 242.6, 1676.0 1.01
CC041/TauUncJ m 658.4 593.1   5 265.2 0.9008 257.2, 1647.0 0.96
CC061/GeniUncJ f 158.4 36.581   3 21.12 0.2309 116.2, 180.2 -1.24
CC061/GeniUncJ m 562.2 520.5   3 300.5 0.9259 75.67, 1111.0 0.48
NOD/ShiLtJ f 543.1 117.1   5 52.38 0.2157 406.1, 660.8 0.07
NOD/ShiLtJ m 252.4 126.1   5 56.37 0.4995 112.1, 414.5 -1.05
NZO/HlLtJ f 684.4 415.5   7 157.0 0.6071 111.6, 1116.0 0.55
NZO/HlLtJ m 822.2 989.5   4 494.8 1.2036 246.4, 2300.0 1.77
PWK/PhJ f 126.5 64.06   6 26.153 0.5064 59.19, 226.5 -1.35
PWK/PhJ m 141.9 39.223   6 16.013 0.2765 70.2, 184.9 -1.6
WSB/EiJ f 780.5 396.8   5 177.5 0.5084 335.3, 1206.0 0.88
WSB/EiJ m 338.8 152.1   4 76.03 0.4489 240.6, 565.4 -0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 601.4142857143 152.4176532606 903.3243226902 299.5042487383
129S1/SvImJ m 788.16 180.3429994085 1145.3847732136 430.9352267864
A/J f 1107.1 164.6298814403 1433.200110648 780.999889352
A/J m 486.3833333333 164.6298814403 812.4834439813 160.2832226854
C57BL/6J f 476.5666666667 164.6298814403 802.6667773146 150.4665560187
C57BL/6J m 788.55 164.6298814403 1114.650110648 462.449889352
CAST/EiJ f 401.8285714286 152.4176532606 703.7386084045 99.9185344526
CAST/EiJ m 321.95 201.6296029718 721.3394380763 -77.4394380763
CC002/UncJ f 975.25 285.1473190986 1540.0719599961 410.4280400039
CC002/UncJ m 357.55 285.1473190986 922.3719599961 -207.2719599961
CC004/TauUncJ f 140.71 201.6296029718 540.0994380763 -258.6794380763
CC004/TauUncJ m 532.2142857143 152.4176532606 834.1243226902 230.3042487383
CC006/TauUncJ f 155.82 232.8218111047 616.9951991697 -305.3551991697
CC006/TauUncJ m 256.9733333333 232.8218111047 718.1485325031 -204.2018658364
CC011/UncJ f 631.8 232.8218111047 1092.9751991697 170.6248008303
CC011/UncJ m 387.6 285.1473190986 952.4219599961 -177.2219599961
CC012/GeniUncJ f 557.4666666667 232.8218111047 1018.6418658364 96.2914674969
CC012/GeniUncJ m 548.0666666667 232.8218111047 1009.2418658364 86.8914674969
CC028/GeniUncJ f 346.1333333333 232.8218111047 807.3085325031 -115.0418658364
CC028/GeniUncJ m 304.7666666667 232.8218111047 765.9418658364 -156.4085325031
CC032/GeniUncJ f 378.5 285.1473190986 943.3219599961 -186.3219599961
CC032/GeniUncJ m 304.7 232.8218111047 765.8751991697 -156.4751991697
CC041/TauUncJ f 818.7666666667 164.6298814403 1144.8667773146 492.6665560187
CC041/TauUncJ m 658.4 180.3429994085 1015.6247732136 301.1752267864
CC061/GeniUncJ f 158.4333333333 232.8218111047 619.6085325031 -302.7418658364
CC061/GeniUncJ m 562.1566666667 232.8218111047 1023.3318658364 100.9814674969
NOD/ShiLtJ f 543.08 180.3429994085 900.3047732136 185.8552267864
NOD/ShiLtJ m 252.38 180.3429994085 609.6047732136 -104.8447732136
NZO/HlLtJ f 684.3857142857 152.4176532606 986.2957512617 382.4756773098
NZO/HlLtJ m 822.175 201.6296029718 1221.5644380763 422.7855619237
PWK/PhJ f 126.4933333333 164.6298814403 452.5934439813 -199.6067773146
PWK/PhJ m 141.85 164.6298814403 467.950110648 -184.250110648
WSB/EiJ f 780.5 180.3429994085 1137.7247732136 423.2752267864
WSB/EiJ m 338.75 201.6296029718 738.1394380763 -60.6394380763


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 694.7871428571 118.0622065493 928.6456519093 460.928633805
A/J both 796.7416666667 116.4109055524 1027.3292662515 566.1540670818
C57BL/6J both 632.5583333333 116.4109055524 863.1459329182 401.9707337485
CAST/EiJ both 361.8892857143 126.378041823 612.2198639872 111.5587074414
CC002/UncJ both 666.4 201.6296029718 1065.7894380763 267.0105619237
CC004/TauUncJ both 336.4621428571 126.378041823 586.79272113 86.1315645843
CC006/TauUncJ both 206.3966666667 164.6298814403 532.4967773146 -119.7034439813
CC011/UncJ both 509.7 184.0618030141 874.2910074395 145.1089925605
CC012/GeniUncJ both 552.7666666667 164.6298814403 878.8667773146 226.6665560187
CC028/GeniUncJ both 325.45 164.6298814403 651.550110648 -0.650110648
CC032/GeniUncJ both 341.6 184.0618030141 706.1910074395 -22.9910074395
CC041/TauUncJ both 738.5833333333 122.0927877668 980.4256480563 496.7410186104
CC061/GeniUncJ both 360.295 164.6298814403 686.395110648 34.194889352
NOD/ShiLtJ both 397.73 127.5217578213 650.3260595472 145.1339404528
NZO/HlLtJ both 753.2803571429 126.378041823 1003.6109354157 502.94977887
PWK/PhJ both 134.1716666667 116.4109055524 364.7592662515 -96.4159329182
WSB/EiJ both 559.625 135.2572495564 827.5435799102 291.7064200898




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA