Project measure / variable:   CSNA03   trial_init_latency_cc_acq_Binghamton

ID, description, units MPD:112903   trial_init_latency_cc_acq_Binghamton   mean latency (across trials) between illumination of central hole and initiation of trial (reversal learning assay), CC   [centiseconds/n]  acquisition  
Data set, strains CSNA03   CC w/par   18 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - mean latency (across trials) between illumination of central hole and initiation of trial (reversal learning assay), CC acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains18 strains
Mean of the strain means520.7   centiseconds/n 425.1   centiseconds/n
Median of the strain means418.5   centiseconds/n 325.9   centiseconds/n
SD of the strain means± 419.6 ± 265.9
Coefficient of variation (CV)0.8058 0.6256
Min–max range of strain means109.0   –   1553.0   centiseconds/n 160.1   –   990.8   centiseconds/n
Mean sample size per strain4.4   mice 4.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 304383.356 304383.356 1.3975 0.2395
strain 16 11021455.3478 688840.9592 3.1627 0.0002
sex:strain 16 4385657.0965 274103.5685 1.2585 0.2358
Residuals 117 25482496.4531 217799.115


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 662.5 342.2   7 129.3 0.5165 208.0, 1115.0 0.34
129S1/SvImJ m 815.4 550.4   5 246.2 0.675 103.3, 1521.0 1.47
A/J f 1280.0 935.8   6 382.0 0.7312 238.0, 2714.0 1.81
A/J m 990.8 761.2   6 310.7 0.7682 281.6, 2153.0 2.13
C57BL/6J f 468.5 249.3   6 101.8 0.5321 159.4, 859.6 -0.12
C57BL/6J m 308.6 62.17   6 25.381 0.2014 194.1, 367.8 -0.44
CAST/EiJ f 397.8 228.4   7 86.34 0.5742 195.0, 825.4 -0.29
CAST/EiJ m 458.2 157.3   4 78.65 0.3433 344.9, 689.8 0.12
CC002/UncJ f 198.3 37.63   3 21.726 0.1898 154.9, 222.3 -0.77
CC002/UncJ m 161.4 76.16   2   53.85 0.4717 107.6, 215.3 -0.99
CC004/TauUncJ f 152.9 90.24   4 45.122 0.5904 57.04, 269.7 -0.88
CC004/TauUncJ m 275.9 300.4   7 113.5 1.0886 48.15, 939.3 -0.56
CC006/TauUncJ f 109.0 28.054   3 16.197 0.2575 86.48, 140.4 -0.98
CC006/TauUncJ m 160.1 147.5   3 85.15 0.9214 51.1, 327.9 -1.0
CC011/UncJ f 144.2 137.9   3 79.6 0.9565 30.952, 297.7 -0.9
CC011/UncJ m 896.5 986.9   3 569.8 1.1007 256.1, 2033.0 1.77
CC012/GeniUncJ f 354.5 208.3   3 120.2 0.5876 210.0, 593.2 -0.4
CC012/GeniUncJ m 534.3 400.2   3 231.0 0.749 254.7, 992.7 0.41
CC025/GeniUncJ f 1553.0 0.0   1   0.0 0.0 1553.0, 1553.0 2.46
CC025/GeniUncJ m 328.2 274.4   2   194.0 0.8359 134.2, 522.2 -0.36
CC028/GeniUncJ f 207.6 110.9   3 64.02 0.5342 98.73, 320.4 -0.75
CC028/GeniUncJ m 366.5 211.9   3 122.3 0.5781 192.4, 602.4 -0.22
CC032/GeniUncJ f 298.2 124.5   2   88.0 0.4173 210.2, 386.2 -0.53
CC032/GeniUncJ m 255.0 78.65   3 45.409 0.3084 184.8, 340.0 -0.64
CC041/TauUncJ f 572.4 389.3   6 158.9 0.6801 160.5, 1169.0 0.12
CC041/TauUncJ m 779.4 663.3   5 296.6 0.851 274.4, 1592.0 1.33
CC061/GeniUncJ f 475.8 481.5   3 278.0 1.012 150.4, 1029.0 -0.11
CC061/GeniUncJ m 291.9 308.7   3 178.2 1.0575 47.85, 639.0 -0.5
NOD/ShiLtJ f 449.1 216.8   5 96.94 0.4827 158.3, 668.8 -0.17
NOD/ShiLtJ m 332.8 109.6   5 49.005 0.3293 168.2, 409.3 -0.35
NZO/HlLtJ f 1257.0 1096.0   7 414.1 0.8717 189.5, 2704.0 1.75
NZO/HlLtJ m 206.6 34.252   4 17.126 0.1658 160.2, 241.7 -0.82
PWK/PhJ f 352.7 509.0   6 207.8 1.4433 108.8, 1389.0 -0.4
PWK/PhJ m 165.8 71.63   6 29.245 0.4322 73.96, 247.4 -0.97
WSB/EiJ f 439.1 319.8   5 143.0 0.7283 153.2, 986.2 -0.19
WSB/EiJ m 323.6 160.2   4 80.1 0.4951 184.7, 525.6 -0.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 662.5 176.3920612824 1011.8352341935 313.1647658065
129S1/SvImJ m 815.4 208.7099015304 1228.7390233072 402.0609766927
A/J f 1279.85 190.5252017381 1657.1751782709 902.5248217291
A/J m 990.8166666667 190.5252017381 1368.1418449376 613.4914883958
C57BL/6J f 468.4833333333 190.5252017381 845.8085116042 91.1581550624
C57BL/6J m 308.6166666667 190.5252017381 685.9418449376 -68.7085116042
CAST/EiJ f 397.7857142857 176.3920612824 747.1209484792 48.4504800923
CAST/EiJ m 458.175 233.3447636996 920.3020769342 -3.9520769342
CC002/UncJ f 198.2666666667 269.4433242719 731.8850512022 -335.3517178689
CC002/UncJ m 161.45 329.9993295327 814.9963797402 -492.0963797402
CC004/TauUncJ f 152.86 233.3447636996 614.9870769342 -309.2670769342
CC004/TauUncJ m 275.9214285714 176.3920612824 625.2566627649 -73.413805622
CC006/TauUncJ f 108.96 269.4433242719 642.5783845355 -424.6583845355
CC006/TauUncJ m 160.0666666667 269.4433242719 693.6850512022 -373.5517178689
CC011/UncJ f 144.1506666667 269.4433242719 677.7690512022 -389.4677178689
CC011/UncJ m 896.5333333333 269.4433242719 1430.1517178689 362.9149487978
CC012/GeniUncJ f 354.4666666667 269.4433242719 888.0850512022 -179.1517178689
CC012/GeniUncJ m 534.3 269.4433242719 1067.9183845355 0.6816154645
CC028/GeniUncJ f 207.5766666667 269.4433242719 741.1950512022 -326.0417178689
CC028/GeniUncJ m 366.5 269.4433242719 900.1183845355 -167.1183845355
CC032/GeniUncJ f 298.2 329.9993295327 951.7463797402 -355.3463797402
CC032/GeniUncJ m 255.0 269.4433242719 788.6183845355 -278.6183845355
CC041/TauUncJ f 572.3833333333 190.5252017381 949.7085116042 195.0581550624
CC041/TauUncJ m 779.4 208.7099015304 1192.7390233073 366.0609766927
CC061/GeniUncJ f 475.8333333333 269.4433242719 1009.4517178689 -57.7850512022
CC061/GeniUncJ m 291.95 269.4433242719 825.5683845355 -241.6683845355
NOD/ShiLtJ f 449.12 208.7099015304 862.4590233073 35.7809766927
NOD/ShiLtJ m 332.76 208.7099015304 746.0990233073 -80.5790233073
NZO/HlLtJ f 1256.8428571429 176.3920612824 1606.1780913363 907.5076229494
NZO/HlLtJ m 206.6 233.3447636996 668.7270769342 -255.5270769342
PWK/PhJ f 352.65 190.5252017381 729.9751782709 -24.6751782709
PWK/PhJ m 165.75 190.5252017381 543.0751782709 -211.5751782709
WSB/EiJ f 439.1 208.7099015304 852.4390233073 25.7609766927
WSB/EiJ m 323.575 233.3447636996 785.7020769342 -138.5520769342


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 738.95 136.63270315 1009.5439088549 468.3560911451
A/J both 1135.3333333333 134.7216621359 1402.1425256011 868.5241410656
C57BL/6J both 388.55 134.7216621359 655.3591922678 121.7408077322
CAST/EiJ both 427.9803571429 146.2565708177 717.6338316105 138.3268826752
CC002/UncJ both 179.8583333333 213.0136512566 601.7207074513 -242.0040407846
CC004/TauUncJ both 214.3907142857 146.2565708177 504.0441887534 -75.2627601819
CC006/TauUncJ both 134.5133333333 190.5252017381 511.8385116042 -242.8118449376
CC011/UncJ both 520.342 190.5252017381 897.6671782709 143.0168217291
CC012/GeniUncJ both 444.3833333333 190.5252017381 821.7085116042 67.0581550624
CC028/GeniUncJ both 287.0383333333 190.5252017381 664.3635116042 -90.2868449376
CC032/GeniUncJ both 276.6 213.0136512566 698.462374118 -145.262374118
CC041/TauUncJ both 675.8916666667 141.2972712884 955.7235082902 396.0598250431
CC061/GeniUncJ both 383.8916666667 190.5252017381 761.2168449376 6.5664883958
NOD/ShiLtJ both 390.94 147.5801866729 683.2148263096 98.6651736904
NZO/HlLtJ both 731.7214285714 146.2565708177 1021.3749030391 442.0679541038
PWK/PhJ both 259.2 134.7216621359 526.0091922678 -7.6091922678
WSB/EiJ both 381.3375 156.5324261478 691.3417674804 71.3332325196




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA