Project measure / variable:   CSNA03   total_time_cc_acq_Binghamton

ID, description, units MPD:112901   total_time_cc_acq_Binghamton   total time for all trials (reversal learning assay), CC   [min]  acquisition  
Data set, strains CSNA03   CC w/par   18 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total time for all trials (reversal learning assay), CC acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains18 strains
Mean of the strain means207.9   min 206.5   min
Median of the strain means149.8   min 160.5   min
SD of the strain means± 179.9 ± 148.6
Coefficient of variation (CV)0.8655 0.7198
Min–max range of strain means19.953   –   653.1   min 44.021   –   616.5   min
Mean sample size per strain4.4   mice 4.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2115.1924 2115.1924 0.0299 0.8629
strain 16 3321405.4174 207587.8386 2.9381 0.0004
sex:strain 16 1200928.3263 75058.0204 1.0623 0.3988
Residuals 117 8266418.5809 70653.1503


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 237.6 145.3   7 54.91 0.6115 59.4, 417.3 0.17
129S1/SvImJ m 431.0 440.0   5 196.8 1.0208 47.61, 950.3 1.51
A/J f 653.1 469.4   6 191.6 0.7187 24.843, 1123.0 2.48
A/J m 616.5 528.8   6 215.9 0.8577 94.08, 1432.0 2.76
C57BL/6J f 180.2 186.3   6 76.05 1.034 25.975, 537.1 -0.15
C57BL/6J m 78.85 64.3   6 26.249 0.8154 17.408, 162.1 -0.86
CAST/EiJ f 259.8 190.6   7 72.02 0.7335 25.33, 596.1 0.29
CAST/EiJ m 296.4 132.1   4 66.04 0.4457 154.0, 426.7 0.61
CC002/UncJ f 54.61 26.965   3 15.568 0.4938 29.187, 82.89 -0.85
CC002/UncJ m 44.021 47.614   2   33.669 1.0816 10.353, 77.69 -1.09
CC004/TauUncJ f 75.92 72.07   4 36.036 0.9493 19.215, 178.8 -0.73
CC004/TauUncJ m 178.2 191.6   7 72.43 1.0754 8.943, 582.2 -0.19
CC006/TauUncJ f 92.63 75.05   3 43.33 0.8102 25.938, 173.9 -0.64
CC006/TauUncJ m 113.8 129.8   3 74.96 1.1405 27.917, 263.2 -0.62
CC011/UncJ f 19.953 9.3568   3 5.4022 0.4689 9.15, 25.502 -1.04
CC011/UncJ m 288.1 324.3   3 187.3 1.1257 44.993, 656.4 0.55
CC012/GeniUncJ f 86.77 110.6   3 63.84 1.2745 16.085, 214.2 -0.67
CC012/GeniUncJ m 271.9 231.1   3 133.4 0.85 78.06, 527.7 0.44
CC025/GeniUncJ f 438.0 0.0   1   0.0 0.0 438.0, 438.0 1.28
CC025/GeniUncJ m 138.7 153.8   2   108.7 1.1088 29.952, 247.4 -0.46
CC028/GeniUncJ f 32.171 15.247   3 8.8026 0.4739 20.828, 49.503 -0.98
CC028/GeniUncJ m 183.9 80.18   3 46.294 0.4359 100.8, 260.8 -0.15
CC032/GeniUncJ f 123.3 153.1   2   108.2 1.242 15.008, 231.5 -0.47
CC032/GeniUncJ m 174.6 92.71   3 53.52 0.531 105.7, 280.0 -0.21
CC041/TauUncJ f 152.3 186.7   6 76.22 1.2261 28.247, 508.9 -0.31
CC041/TauUncJ m 359.5 408.3   5 182.6 1.1355 41.465, 1020.0 1.03
CC061/GeniUncJ f 267.8 379.7   3 219.2 1.4179 20.98, 705.0 0.33
CC061/GeniUncJ m 146.4 121.4   3 70.1 0.8292 6.728, 226.6 -0.4
NOD/ShiLtJ f 147.2 140.3   5 62.76 0.9535 17.765, 315.8 -0.34
NOD/ShiLtJ m 141.4 139.0   5 62.14 0.9824 13.987, 317.9 -0.44
NZO/HlLtJ f 565.4 603.9   7 228.3 1.068 77.42, 1726.0 1.99
NZO/HlLtJ m 58.86 51.1   4 25.55 0.8682 15.047, 132.7 -0.99
PWK/PhJ f 98.76 78.09   6 31.878 0.7907 20.942, 229.1 -0.61
PWK/PhJ m 60.28 42.187   6 17.223 0.6998 18.103, 115.7 -0.98
WSB/EiJ f 255.8 192.2   5 85.97 0.7515 88.86, 566.6 0.27
WSB/EiJ m 133.9 87.44   4 43.722 0.6531 38.818, 231.1 -0.49


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 237.57 100.4654526719 436.5365644948 38.6034355052
129S1/SvImJ m 431.022 118.8723266905 666.4424139441 195.6015860559
A/J f 653.0905 108.5150913192 867.998952024 438.182047976
A/J m 616.5466666667 108.5150913192 831.4551186906 401.6382146427
C57BL/6J f 180.167 108.5150913192 395.075452024 -34.741452024
C57BL/6J m 78.8495 108.5150913192 293.757952024 -136.058952024
CAST/EiJ f 259.8042857143 100.4654526719 458.7708502091 60.8377212195
CAST/EiJ m 296.35 132.9033015617 559.5580244351 33.1419755649
CC002/UncJ f 54.6123333333 153.4635138657 358.5387808542 -249.3141141876
CC002/UncJ m 44.0215 187.9536515528 416.2538578815 -328.2108578815
CC004/TauUncJ f 75.91925 132.9033015617 339.1272744351 -187.2887744351
CC004/TauUncJ m 178.2104285714 100.4654526719 377.1769930662 -20.7561359234
CC006/TauUncJ f 92.6326666667 153.4635138657 396.5591141876 -211.2937808542
CC006/TauUncJ m 113.8423333333 153.4635138657 417.7687808542 -190.0841141876
CC011/UncJ f 19.953 153.4635138657 323.8794475209 -283.9734475209
CC011/UncJ m 288.131 153.4635138657 592.0574475209 -15.7954475209
CC012/GeniUncJ f 86.765 153.4635138657 390.6914475209 -217.1614475209
CC012/GeniUncJ m 271.92 153.4635138657 575.8464475209 -32.0064475209
CC028/GeniUncJ f 32.1713333333 153.4635138657 336.0977808542 -271.7551141876
CC028/GeniUncJ m 183.9333333333 153.4635138657 487.8597808542 -119.9931141876
CC032/GeniUncJ f 123.254 187.9536515528 495.4863578815 -248.9783578815
CC032/GeniUncJ m 174.6 153.4635138657 478.5264475209 -129.3264475209
CC041/TauUncJ f 152.2645 108.5150913192 367.172952024 -62.643952024
CC041/TauUncJ m 359.533 118.8723266905 594.9534139441 124.1125860559
CC061/GeniUncJ f 267.7866666667 153.4635138657 571.7131141876 -36.1397808542
CC061/GeniUncJ m 146.4093333333 153.4635138657 450.3357808542 -157.5171141876
NOD/ShiLtJ f 147.1774 118.8723266905 382.5978139441 -88.2430139441
NOD/ShiLtJ m 141.438 118.8723266905 376.8584139441 -93.9824139441
NZO/HlLtJ f 565.4457142857 100.4654526719 764.4122787805 366.4791497909
NZO/HlLtJ m 58.8575 132.9033015617 322.0655244351 -204.3505244351
PWK/PhJ f 98.7581666667 108.5150913192 313.6666186906 -116.1502853573
PWK/PhJ m 60.2841666667 108.5150913192 275.1926186906 -154.6242853573
WSB/EiJ f 255.792 118.8723266905 491.2124139441 20.3715860559
WSB/EiJ m 133.897 132.9033015617 397.1050244351 -129.3110244351


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 334.296 77.8202050135 488.4148381481 180.1771618519
A/J both 634.8185833333 76.7317569329 786.7818070938 482.8553595729
C57BL/6J both 129.50825 76.7317569329 281.4714737605 -22.4549737605
CAST/EiJ both 278.0771428571 83.3015527265 443.051502921 113.1027827933
CC002/UncJ both 49.3169166667 121.3235603871 289.5918704991 -190.9580371658
CC004/TauUncJ both 127.0648392857 83.3015527265 292.0391993495 -37.9095207781
CC006/TauUncJ both 103.2375 108.5150913192 318.145952024 -111.670952024
CC011/UncJ both 154.042 108.5150913192 368.950452024 -60.866452024
CC012/GeniUncJ both 179.3425 108.5150913192 394.250952024 -35.565952024
CC028/GeniUncJ both 108.0523333333 108.5150913192 322.9607853573 -106.8561186906
CC032/GeniUncJ both 148.927 121.3235603871 389.2019538324 -91.3479538324
CC041/TauUncJ both 255.89875 80.4769456068 415.2791236764 96.5183763236
CC061/GeniUncJ both 207.098 108.5150913192 422.006452024 -7.810452024
NOD/ShiLtJ both 144.3077 84.0554282983 310.7750711296 -22.1596711296
NZO/HlLtJ both 312.1516071429 83.3015527265 477.1259672067 147.177247079
PWK/PhJ both 79.5211666667 76.7317569329 231.4843904271 -72.4420570938
WSB/EiJ both 194.8445 89.1542450179 371.4098104581 18.2791895419




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA