Project measure / variable:   CSNA03   omit_cc_acq_Binghamton

ID, description, units MPD:112895   omit_cc_acq_Binghamton   total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), CC   [n]  acquisition  
Data set, strains CSNA03   CC w/par   18 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), CC acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains18 strains
Mean of the strain means37.455   n 39.992   n
Median of the strain means31.916   n 31.0   n
SD of the strain means± 30.125 ± 28.935
Coefficient of variation (CV)0.8043 0.7235
Min–max range of strain means4.6667   –   101.0   n 4.0   –   91.75   n
Mean sample size per strain4.3   mice 3.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 167.2809 167.2809 0.0964 0.7568
strain 15 96177.515 6411.8343 3.6957 < 0.0001
sex:strain 15 19062.6112 1270.8407 0.7325 0.7469
Residuals 108 187373.8143 1734.9427


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 55.57 34.923   7 13.2 0.6284 8.0, 111.0 0.6
129S1/SvImJ m 84.8 81.78   5 36.574 0.9644 11.0, 192.0 1.55
A/J f 94.67 72.66   6 29.662 0.7675 9.0, 217.0 1.9
A/J m 89.0 65.07   6 26.563 0.7311 15.0, 181.0 1.69
C57BL/6J f 33.0 29.086   6 11.874 0.8814 2.0, 77.0 -0.15
C57BL/6J m 16.833 19.052   6 7.7778 1.1318 1.0, 50.0 -0.8
CAST/EiJ f 80.57 43.745   7 16.534 0.5429 7.0, 125.0 1.43
CAST/EiJ m 91.75 48.617   4 24.308 0.5299 47.0, 159.0 1.79
CC002/UncJ f 17.333 17.098   3 9.8714 0.9864 6.0, 37.0 -0.67
CC002/UncJ m 4.0 4.2426   2   3.0 1.0607 1.0, 7.0 -1.24
CC004/TauUncJ f 12.5 14.526   4 7.2629 1.1621 2.0, 34.0 -0.83
CC004/TauUncJ m 25.857 28.299   7 10.696 1.0944 1.0, 67.0 -0.49
CC006/TauUncJ f 26.0 23.58   3 13.614 0.9069 6.0, 52.0 -0.38
CC006/TauUncJ m 33.0 49.487   3 28.572 1.4996 1.0, 90.0 -0.24
CC011/UncJ f 5.5 3.5355   2   2.5 0.6428 3.0, 8.0 -1.06
CC011/UncJ m 50.67 39.954   3 23.068 0.7886 6.0, 83.0 0.37
CC012/GeniUncJ f 8.3333 11.846   3 6.8394 1.4215 1.0, 22.0 -0.97
CC012/GeniUncJ m 57.67 57.14   3 32.992 0.9909 17.0, 123.0 0.61
CC025/GeniUncJ f 34.0 0.0   1   0.0 0.0 34.0, 34.0 -0.11
CC025/GeniUncJ m 23.0 31.113   2   22.0 1.3527 1.0, 45.0 -0.59
CC028/GeniUncJ f 4.6667 1.5275   3 0.88192 0.3273 3.0, 6.0 -1.09
CC028/GeniUncJ m 29.0 33.779   3 19.502 1.1648 9.0, 68.0 -0.38
CC032/GeniUncJ f 101.0 0.0   1   0.0 0.0 101.0, 101.0 2.11
CC032/GeniUncJ m 46.333 15.822   3 9.1348 0.3415 29.0, 60.0 0.22
CC041/TauUncJ f 30.833 42.939   6 17.53 1.3926 2.0, 115.0 -0.22
CC041/TauUncJ m 56.2 55.45   5 24.8 0.9867 10.0, 146.0 0.56
CC061/GeniUncJ f 55.33 75.59   3 43.644 1.3661 3.0, 142.0 0.59
CC061/GeniUncJ m 64.0 14.142   2   10.0 0.221 54.0, 74.0 0.83
NOD/ShiLtJ f 15.2 19.499   5 8.7201 1.2828 3.0, 49.0 -0.74
NOD/ShiLtJ m 18.25 17.095   4 8.5477 0.9367 2.0, 34.0 -0.75
NZO/HlLtJ f 53.29 51.8   7 19.58 0.9722 6.0, 156.0 0.53
NZO/HlLtJ m 5.25 4.3493   4 2.1747 0.8284 1.0, 11.0 -1.2
PWK/PhJ f 11.4 6.9857   5 3.1241 0.6128 2.0, 20.0 -0.86
PWK/PhJ m 4.5 5.1962   4 2.5981 1.1547 1.0, 12.0 -1.23
WSB/EiJ f 35.0 29.487   5 13.187 0.8425 9.0, 81.0 -0.08
WSB/EiJ m 19.75 20.903   4 10.451 1.0584 1.0, 47.0 -0.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 55.5714285714 15.7432195149 86.7772208358 24.365636307
129S1/SvImJ m 84.8 18.6276285386 121.7231913462 47.8768086538
A/J f 94.6666666667 17.0046205724 128.372774659 60.9605586743
A/J m 89.0 17.0046205724 122.7061079923 55.2938920077
C57BL/6J f 33.0 17.0046205724 66.7061079923 -0.7061079923
C57BL/6J m 16.8333333333 17.0046205724 50.5394413257 -16.872774659
CAST/EiJ f 80.5714285714 15.7432195149 111.7772208358 49.365636307
CAST/EiJ m 91.75 20.826321836 133.0313828982 50.4686171018
CC002/UncJ f 17.3333333333 24.0481650365 65.0009683909 -30.3343017242
CC002/UncJ m 4.0 29.4528667948 62.3806915681 -54.3806915681
CC004/TauUncJ f 12.5 20.826321836 53.7813828982 -28.7813828982
CC004/TauUncJ m 25.8571428571 15.7432195149 57.0629351215 -5.3486494073
CC006/TauUncJ f 26.0 24.0481650365 73.6676350576 -21.6676350576
CC006/TauUncJ m 33.0 24.0481650365 80.6676350576 -14.6676350576
CC011/UncJ f 5.5 29.4528667948 63.8806915681 -52.8806915681
CC011/UncJ m 50.6666666667 24.0481650365 98.3343017242 2.9990316091
CC012/GeniUncJ f 8.3333333333 24.0481650365 56.0009683909 -39.3343017242
CC012/GeniUncJ m 57.6666666667 24.0481650365 105.3343017242 9.9990316091
CC028/GeniUncJ f 4.6666666667 24.0481650365 52.3343017242 -43.0009683909
CC028/GeniUncJ m 29.0 24.0481650365 76.6676350576 -18.6676350576
CC041/TauUncJ f 30.8333333333 17.0046205724 64.5394413257 -2.872774659
CC041/TauUncJ m 56.2 18.6276285386 93.1231913462 19.2768086538
CC061/GeniUncJ f 55.3333333333 24.0481650365 103.0009683909 7.6656982758
CC061/GeniUncJ m 64.0 29.4528667948 122.3806915681 5.6193084319
NOD/ShiLtJ f 15.2 18.6276285386 52.1231913462 -21.7231913462
NOD/ShiLtJ m 18.25 20.826321836 59.5313828982 -23.0313828982
NZO/HlLtJ f 53.2857142857 15.7432195149 84.4915065501 22.0799220213
NZO/HlLtJ m 5.25 20.826321836 46.5313828982 -36.0313828982
PWK/PhJ f 11.4 18.6276285386 48.3231913462 -25.5231913462
PWK/PhJ m 4.5 20.826321836 45.7813828982 -36.7813828982
WSB/EiJ f 35.0 18.6276285386 71.9231913462 -1.9231913462
WSB/EiJ m 19.75 20.826321836 61.0313828982 -21.5313828982


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 70.1857142857 12.1946453994 94.3576170348 46.0138115367
A/J both 91.8333333333 12.0240825182 115.6671508621 67.9995158046
C57BL/6J both 24.9166666667 12.0240825182 48.7504841954 1.0828491379
CAST/EiJ both 86.1607142857 13.0535880308 112.0351903424 60.286238229
CC002/UncJ both 10.6666666667 19.0117437657 48.3512410306 -27.0179076972
CC004/TauUncJ both 19.1785714286 13.0535880308 45.0530474853 -6.6959046281
CC006/TauUncJ both 29.5 17.0046205724 63.2061079923 -4.2061079923
CC011/UncJ both 28.0833333333 19.0117437657 65.7679076972 -9.6012410306
CC012/GeniUncJ both 33.0 17.0046205724 66.7061079923 -0.7061079923
CC028/GeniUncJ both 16.8333333333 17.0046205724 50.5394413257 -16.872774659
CC041/TauUncJ both 43.5166666667 12.6109641363 68.5137853765 18.5195479568
CC061/GeniUncJ both 59.6666666667 19.0117437657 97.3512410306 21.9820923028
NOD/ShiLtJ both 16.725 13.970721404 44.4173935096 -10.9673935096
NZO/HlLtJ both 29.2678571429 13.0535880308 55.1423331995 3.3933810862
PWK/PhJ both 7.95 13.970721404 35.6423935096 -19.7423935096
WSB/EiJ both 27.375 13.970721404 55.0673935096 -0.3173935096




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA