Project measure / variable:   CSNA03   correct_cc_rev_Binghamton

ID, description, units MPD:112894   correct_cc_rev_Binghamton   total number of correct responses (successful response in central nose poke hole with subsequent response in correct flanking hole) (reversal learning assay), CC   [n]  reversal  
Data set, strains CSNA03   CC w/par   18 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of correct responses (successful response in central nose poke hole with subsequent response in correct flanking hole) (reversal learning assay), CC reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested17 strains18 strains
Mean of the strain means53.97   n 52.39   n
Median of the strain means52.8   n 51.25   n
SD of the strain means± 14.532 ± 12.093
Coefficient of variation (CV)0.2693 0.2308
Min–max range of strain means29.667   –   80.67   n 37.0   –   80.0   n
Mean sample size per strain4.6   mice 4.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 50.7305 50.7305 0.0656 0.7983
strain 16 16380.4092 1023.7756 1.3234 0.1949
sex:strain 16 5527.0834 345.4427 0.4465 0.966
Residuals 115 88965.6024 773.6139


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 51.14 17.639   7 6.667 0.3449 36.0, 88.0 -0.19
129S1/SvImJ m 43.0 13.172   5 5.8907 0.3063 23.0, 58.0 -0.78
A/J f 60.33 24.089   6 9.8342 0.3993 30.0, 88.0 0.44
A/J m 57.0 25.06   6 10.231 0.4396 17.0, 88.0 0.38
C57BL/6J f 80.67 60.08   6 24.527 0.7448 22.0, 189.0 1.84
C57BL/6J m 47.0 17.821   6 7.2755 0.3792 32.0, 79.0 -0.45
CAST/EiJ f 40.143 21.091   7 7.9715 0.5254 18.0, 72.0 -0.95
CAST/EiJ m 60.0 30.332   4 15.166 0.5055 28.0, 94.0 0.63
CC002/UncJ f 51.5 19.092   2   13.5 0.3707 38.0, 65.0 -0.17
CC002/UncJ m 54.5 45.962   2   32.5 0.8433 22.0, 87.0 0.17
CC004/TauUncJ f 34.5 27.0   4 13.5 0.7826 21.0, 75.0 -1.34
CC004/TauUncJ m 43.571 30.501   7 11.528 0.7 16.0, 106.0 -0.73
CC006/TauUncJ f 57.67 26.764   3 15.452 0.4641 28.0, 80.0 0.25
CC006/TauUncJ m 52.0 33.287   3 19.218 0.6401 28.0, 90.0 -0.03
CC011/UncJ f 29.667 13.013   3 7.513 0.4386 17.0, 43.0 -1.67
CC011/UncJ m 37.0 21.213   2   15.0 0.5733 22.0, 52.0 -1.27
CC012/GeniUncJ f 76.33 31.501   3 18.187 0.4127 40.0, 96.0 1.54
CC012/GeniUncJ m 80.0 33.422   3 19.296 0.4178 43.0, 108.0 2.28
CC025/GeniUncJ m 37.5 7.7782   2   5.5 0.2074 32.0, 43.0 -1.23
CC028/GeniUncJ f 63.0 22.716   3 13.115 0.3606 47.0, 89.0 0.62
CC028/GeniUncJ m 59.0 14.422   3 8.3267 0.2444 47.0, 75.0 0.55
CC032/GeniUncJ f 71.0 46.669   2   33.0 0.6573 38.0, 104.0 1.17
CC032/GeniUncJ m 77.0 31.097   3 17.954 0.4039 50.0, 111.0 2.04
CC041/TauUncJ f 43.333 32.574   6 13.298 0.7517 17.0, 102.0 -0.73
CC041/TauUncJ m 39.8 19.892   5 8.8961 0.4998 24.0, 74.0 -1.04
CC061/GeniUncJ f 38.667 22.301   3 12.875 0.5767 22.0, 64.0 -1.05
CC061/GeniUncJ m 42.333 26.577   3 15.344 0.6278 26.0, 73.0 -0.83
NOD/ShiLtJ f 52.8 25.675   5 11.482 0.4863 29.0, 93.0 -0.08
NOD/ShiLtJ m 60.0 44.21   5 19.771 0.7368 18.0, 125.0 0.63
NZO/HlLtJ f 44.857 18.479   7 6.9844 0.412 17.0, 73.0 -0.63
NZO/HlLtJ m 48.75 14.08   4 7.0401 0.2888 32.0, 65.0 -0.3
PWK/PhJ f 56.67 19.937   6 8.1391 0.3518 34.0, 80.0 0.19
PWK/PhJ m 50.5 18.759   6 7.6583 0.3715 23.0, 69.0 -0.16
WSB/EiJ f 65.2 23.253   5 10.399 0.3566 35.0, 90.0 0.77
WSB/EiJ m 54.0 29.063   4 14.532 0.5382 31.0, 96.0 0.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 51.1428571429 10.5126721746 71.9664374634 30.3192768223
129S1/SvImJ m 43.0 12.4387614636 67.6387925092 18.3612074908
A/J f 60.3333333333 11.3549837351 82.8253707449 37.8412959217
A/J m 57.0 11.3549837351 79.4920374116 34.5079625884
C57BL/6J f 80.6666666667 11.3549837351 103.1587040783 58.1746292551
C57BL/6J m 47.0 11.3549837351 69.4920374116 24.5079625884
CAST/EiJ f 40.1428571429 10.5126721746 60.9664374634 19.3192768223
CAST/EiJ m 60.0 13.9069580943 87.547007467 32.452992533
CC002/UncJ f 51.5 19.6674087483 90.4573515627 12.5426484373
CC002/UncJ m 54.5 19.6674087483 93.4573515627 15.5426484373
CC004/TauUncJ f 34.5 13.9069580943 62.047007467 6.952992533
CC004/TauUncJ m 43.5714285714 10.5126721746 64.3950088919 22.7478482509
CC006/TauUncJ f 57.6666666667 16.0583719987 89.4752110196 25.8581223138
CC006/TauUncJ m 52.0 16.0583719987 83.8085443529 20.1914556471
CC011/UncJ f 29.6666666667 16.0583719987 61.4752110196 -2.1418776862
CC011/UncJ m 37.0 19.6674087483 75.9573515627 -1.9573515627
CC012/GeniUncJ f 76.3333333333 16.0583719987 108.1418776862 44.5247889804
CC012/GeniUncJ m 80.0 16.0583719987 111.8085443529 48.1914556471
CC028/GeniUncJ f 63.0 16.0583719987 94.8085443529 31.1914556471
CC028/GeniUncJ m 59.0 16.0583719987 90.8085443529 27.1914556471
CC032/GeniUncJ f 71.0 19.6674087483 109.9573515627 32.0426484373
CC032/GeniUncJ m 77.0 16.0583719987 108.8085443529 45.1914556471
CC041/TauUncJ f 43.3333333333 11.3549837351 65.8253707449 20.8412959217
CC041/TauUncJ m 39.8 12.4387614636 64.4387925092 15.1612074908
CC061/GeniUncJ f 38.6666666667 16.0583719987 70.4752110196 6.8581223138
CC061/GeniUncJ m 42.3333333333 16.0583719987 74.1418776862 10.5247889804
NOD/ShiLtJ f 52.8 12.4387614636 77.4387925092 28.1612074908
NOD/ShiLtJ m 60.0 12.4387614636 84.6387925092 35.3612074908
NZO/HlLtJ f 44.8571428571 10.5126721746 65.6807231777 24.0335625366
NZO/HlLtJ m 48.75 13.9069580943 76.297007467 21.202992533
PWK/PhJ f 56.6666666667 11.3549837351 79.1587040783 34.1746292551
PWK/PhJ m 50.5 11.3549837351 72.9920374116 28.0079625884
WSB/EiJ f 65.2 12.4387614636 89.8387925092 40.5612074908
WSB/EiJ m 54.0 13.9069580943 81.547007467 26.452992533


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 47.0714285714 8.1430808512 63.2013045294 30.9415526135
A/J both 58.6666666667 8.0291859994 74.5709388431 42.7623944902
C57BL/6J both 63.8333333333 8.0291859994 79.7376055098 47.9290611569
CAST/EiJ both 50.0714285714 8.7166472868 67.3374292502 32.8054278927
CC002/UncJ both 53.0 13.9069580943 80.547007467 25.452992533
CC004/TauUncJ both 39.0357142857 8.7166472868 56.3017149645 21.769713607
CC006/TauUncJ both 54.8333333333 11.3549837351 77.3253707449 32.3412959217
CC011/UncJ both 33.3333333333 12.6952577576 58.4801956358 8.1864710309
CC012/GeniUncJ both 78.1666666667 11.3549837351 100.6587040783 55.6746292551
CC028/GeniUncJ both 61.0 11.3549837351 83.4920374116 38.5079625884
CC032/GeniUncJ both 74.0 12.6952577576 99.1468623024 48.8531376976
CC041/TauUncJ both 41.5666666667 8.4210813197 58.247208049 24.8861252843
CC061/GeniUncJ both 40.5 11.3549837351 62.9920374116 18.0079625884
NOD/ShiLtJ both 56.4 8.7955325805 73.8222572635 38.9777427365
NZO/HlLtJ both 46.8035714286 8.7166472868 64.0695721073 29.5375707498
PWK/PhJ both 53.5833333333 8.0291859994 69.4876055098 37.6790611569
WSB/EiJ both 59.6 9.3290710977 78.0790943819 41.1209056181




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA