Project measure / variable:   CSNA03   total_time_in_rev_Binghamton

ID, description, units MPD:112884   total_time_in_rev_Binghamton   total time for all trials (reversal learning assay), founders   [min]  reversal  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total time for all trials (reversal learning assay), founders reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means280.9   min 252.0   min
Median of the strain means248.6   min 230.4   min
SD of the strain means± 176.9 ± 135.7
Coefficient of variation (CV)0.6297 0.5386
Min–max range of strain means79.83   –   679.6   min 62.74   –   432.0   min
Mean sample size per strain6.1   mice 5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 16143.8746 16143.8746 0.3024 0.584
strain 7 1237233.0677 176747.5811 3.3113 0.0041
sex:strain 7 733559.2898 104794.1843 1.9633 0.0718
Residuals 73 3896547.7283 53377.3661


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 245.2 186.8   7 70.59 0.7617 70.03, 595.9 -0.2
129S1/SvImJ m 406.5 255.4   5 114.2 0.6284 142.1, 805.9 1.14
A/J f 679.6 321.6   6 131.3 0.4733 230.4, 1199.0 2.25
A/J m 269.8 217.7   6 88.86 0.8067 43.78, 591.2 0.13
C57BL/6J f 261.6 240.8   6 98.3 0.9205 55.8, 710.3 -0.11
C57BL/6J m 357.7 383.6   6 156.6 1.0724 113.8, 1126.0 0.78
CAST/EiJ f 162.7 152.2   7 57.52 0.9355 21.66, 436.8 -0.67
CAST/EiJ m 146.4 26.762   4 13.381 0.1828 106.8, 162.9 -0.78
NOD/ShiLtJ f 243.3 188.7   5 84.41 0.7757 83.38, 561.7 -0.21
NOD/ShiLtJ m 149.6 153.1   5 68.46 1.0229 17.548, 380.7 -0.75
NZO/HlLtJ f 252.0 182.3   7 68.9 0.7233 20.563, 438.1 -0.16
NZO/HlLtJ m 432.0 540.3   4 270.2 1.2506 105.8, 1235.0 1.33
PWK/PhJ f 79.83 69.14   6 28.227 0.8661 23.093, 206.3 -1.14
PWK/PhJ m 62.74 19.534   6 7.9748 0.3114 28.687, 82.96 -1.39
WSB/EiJ f 322.8 109.5   5 48.987 0.3393 225.0, 474.6 0.24
WSB/EiJ m 191.0 200.3   4 100.1 1.0486 87.81, 491.4 -0.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 245.18 87.3231814597 419.2148496728 71.1451503272
129S1/SvImJ m 406.46 103.322181686 612.3808111408 200.5391888592
A/J f 679.6 94.3198160001 867.5791222026 491.6208777974
A/J m 269.795 94.3198160001 457.7741222026 81.8158777974
C57BL/6J f 261.5916666667 94.3198160001 449.5707888693 73.6125444641
C57BL/6J m 357.6833333333 94.3198160001 545.6624555359 169.7042111307
CAST/EiJ f 162.6731428571 87.3231814597 336.7079925299 -11.3617068156
CAST/EiJ m 146.4 115.5177109167 376.6264658463 -83.8264658463
NOD/ShiLtJ f 243.316 103.322181686 449.2368111408 37.3951888592
NOD/ShiLtJ m 149.643 103.322181686 355.5638111408 -56.2778111408
NZO/HlLtJ f 252.0318571429 87.3231814597 426.0667068156 77.9970074701
NZO/HlLtJ m 432.025 115.5177109167 662.2514658463 201.7985341537
PWK/PhJ f 79.8306666667 94.3198160001 267.8097888693 -108.1484555359
PWK/PhJ m 62.7395 94.3198160001 250.7186222026 -125.2396222026
WSB/EiJ f 322.84 103.322181686 528.7608111408 116.9191888592
WSB/EiJ m 191.0025 115.5177109167 421.2289658463 -39.2239658463


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 325.82 67.6402455063 460.6268148885 191.0131851115
A/J both 474.6975 66.6941814939 607.618812031 341.776187969
C57BL/6J both 309.6375 66.6941814939 442.558812031 176.716187969
CAST/EiJ both 154.5365714286 72.4045571005 298.8386456312 10.2344972259
NOD/ShiLtJ both 196.4795 73.0598153171 342.0875019451 50.8714980549
NZO/HlLtJ both 342.0284285714 72.4045571005 486.3305027741 197.7263543688
PWK/PhJ both 71.2850833333 66.6941814939 204.2063953643 -61.6362286976
WSB/EiJ both 256.92125 77.4916362645 411.3618583556 102.4806416444




  GWAS USING LINEAR MIXED MODELS