Project measure / variable:   CSNA03   omit_in_rev_Binghamton

ID, description, units MPD:112878   omit_in_rev_Binghamton   total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), founders   [n]  reversal  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), founders reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means29.078   n 24.217   n
Median of the strain means24.285   n 23.225   n
SD of the strain means± 22.656 ± 16.3
Coefficient of variation (CV)0.7792 0.6731
Min–max range of strain means10.0   –   82.83   n 2.4   –   46.333   n
Mean sample size per strain5.9   mice 4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 477.4929 477.4929 0.5615 0.4562
strain 7 17706.8864 2529.5552 2.9747 0.0087
sex:strain 7 12531.6123 1790.2303 2.1053 0.0543
Residuals 69 58674.3143 850.3524


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 23.714 21.085   7 7.9693 0.8891 2.0, 53.0 -0.24
129S1/SvImJ m 44.2 31.87   5 14.253 0.721 5.0, 92.0 1.23
A/J f 82.83 56.26   6 22.967 0.6792 8.0, 146.0 2.37
A/J m 30.2 28.665   5 12.82 0.9492 5.0, 76.0 0.37
C57BL/6J f 16.333 10.764   6 4.3944 0.659 1.0, 30.0 -0.56
C57BL/6J m 46.333 55.86   6 22.806 1.2057 1.0, 147.0 1.36
CAST/EiJ f 27.286 34.659   7 13.1 1.2702 1.0, 102.0 -0.08
CAST/EiJ m 16.25 12.176   4 6.0879 0.7493 4.0, 32.0 -0.49
NOD/ShiLtJ f 17.8 15.057   5 6.7335 0.8459 1.0, 40.0 -0.5
NOD/ShiLtJ m 9.6 12.219   5 5.4644 1.2728 1.0, 31.0 -0.9
NZO/HlLtJ f 24.857 23.305   7 8.8086 0.9376 5.0, 72.0 -0.19
NZO/HlLtJ m 31.75 27.011   4 13.505 0.8507 6.0, 65.0 0.46
PWK/PhJ f 10.0 7.0711   4 3.5355 0.7071 1.0, 18.0 -0.84
PWK/PhJ m 2.4 1.1402   5 0.5099 0.4751 1.0, 4.0 -1.34
WSB/EiJ f 29.8 18.308   5 8.1878 0.6144 7.0, 57.0 0.03
WSB/EiJ m 13.0 13.54   4 6.77 1.0415 3.0, 33.0 -0.69


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 23.7142857143 11.0217472102 45.7020697777 1.7265016509
129S1/SvImJ m 44.2 13.0411071689 70.2162969545 18.1837030455
A/J f 82.8333333333 11.9048476187 106.5828545079 59.0838121588
A/J m 30.2 13.0411071689 56.2162969545 4.1837030455
C57BL/6J f 16.3333333333 11.9048476187 40.0828545079 -7.4161878412
C57BL/6J m 46.3333333333 11.9048476187 70.0828545079 22.5838121588
CAST/EiJ f 27.2857142857 11.0217472102 49.2734983491 5.2979302223
CAST/EiJ m 16.25 14.5804010657 45.3371042565 -12.8371042565
NOD/ShiLtJ f 17.8 13.0411071689 43.8162969545 -8.2162969545
NOD/ShiLtJ m 9.6 13.0411071689 35.6162969545 -16.4162969545
NZO/HlLtJ f 24.8571428571 11.0217472102 46.8449269205 2.8693587938
NZO/HlLtJ m 31.75 14.5804010657 60.8371042565 2.6628957435
PWK/PhJ f 10.0 14.5804010657 39.0871042565 -19.0871042565
PWK/PhJ m 2.4 13.0411071689 28.4162969545 -23.6162969545
WSB/EiJ f 29.8 13.0411071689 55.8162969545 3.7837030455
WSB/EiJ m 13.0 14.5804010657 42.0871042565 -16.0871042565


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 33.9571428571 8.5374086782 50.9888071566 16.9254785577
A/J both 56.5166666667 8.8288712899 74.1297829671 38.9035503663
C57BL/6J both 31.3333333333 8.4179984802 48.1267808058 14.5398858609
CAST/EiJ both 21.7678571429 9.1387500076 39.9991645703 3.5365497155
NOD/ShiLtJ both 13.7 9.2214553133 32.0962999979 -4.6962999979
NZO/HlLtJ both 28.3035714286 9.1387500076 46.534878856 10.0722640012
PWK/PhJ both 6.2 9.7808303767 25.7122227159 -13.3122227159
WSB/EiJ both 21.4 9.7808303767 40.9122227159 1.8877772841




  GWAS USING LINEAR MIXED MODELS