Project measure / variable:   Schoonjans1   small_intestine_length_HFD

ID, description, units MPD:112872   small_intestine_length_HFD   small intestine length   [cm]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure organ dimensions
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  STRAIN COMPARISON PLOT
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Schoonjans1 - small intestine length HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means38.407   cm
Median of the strain means38.14   cm
SD of the strain means± 3.9153
Coefficient of variation (CV)0.1019
Min–max range of strain means31.05   –   46.65   cm
Mean sample size per strain4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 2684.269 76.6934 14.0923 < 0.0001
Residuals 141 767.3541 5.4422


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 34.76 2.557   5 1.1435 0.0736 31.9, 38.5 -0.93
BXD100 m 43.843 1.4976   7 0.56605 0.0342 41.2, 45.5 1.39
BXD11 m 38.9 3.9962   3 2.3072 0.1027 35.3, 43.2 0.13
BXD12 m 32.225 1.7821   4 0.89104 0.0553 30.3, 34.6 -1.58
BXD27 m 39.88 5.7199   5 2.558 0.1434 36.3, 49.7 0.38
BXD32 m 46.65 2.0825   4 1.0412 0.0446 44.5, 49.5 2.11
BXD34 m 37.625 1.7212   4 0.8606 0.0457 35.4, 39.6 -0.2
BXD39 m 36.38 1.8377   5 0.82183 0.0505 34.5, 39.1 -0.52
BXD40 m 34.62 0.89275   5 0.39925 0.0258 34.1, 36.2 -0.97
BXD43 m 39.12 1.1345   5 0.50735 0.029 38.1, 41.0 0.18
BXD45 m 41.42 1.4237   5 0.63671 0.0344 40.3, 43.7 0.77
BXD48 m 36.74 1.9718   5 0.88182 0.0537 34.8, 39.6 -0.43
BXD48a m 43.42 3.8291   5 1.7124 0.0882 39.4, 48.0 1.28
BXD49 m 41.78 1.9331   5 0.86452 0.0463 39.1, 43.6 0.86
BXD51 m 38.28 0.9094   5 0.40669 0.0238 37.2, 39.6 -0.03
BXD53 m 40.32 1.4096   5 0.6304 0.035 38.0, 41.4 0.49
BXD55 m 40.86 2.6207   5 1.172 0.0641 37.6, 44.0 0.63
BXD6 m 36.62 2.3858   5 1.067 0.0651 34.0, 39.4 -0.46
BXD62 m 46.2 0.97468   5 0.43589 0.0211 45.0, 47.5 1.99
BXD63 m 38.38 1.5611   5 0.69814 0.0407 35.7, 39.4 -0.01
BXD64 m 35.12 1.7655   5 0.78956 0.0503 33.7, 38.2 -0.84
BXD66 m 33.233 1.9513   9 0.65043 0.0587 29.9, 35.3 -1.32
BXD67 m 38.96 2.0007   5 0.89476 0.0514 36.0, 40.9 0.14
BXD69 m 34.66 2.1279   5 0.95163 0.0614 31.2, 36.6 -0.96
BXD73 m 43.52 5.0037   5 2.2377 0.115 35.5, 48.2 1.31
BXD75 m 36.75 2.457   4 1.2285 0.0669 34.7, 39.9 -0.42
BXD77 m 33.3 2.0893   5 0.93434 0.0627 29.7, 34.8 -1.3
BXD79 m 37.76 2.7952   5 1.25 0.074 34.5, 41.0 -0.17
BXD8 m 31.05 2.1486   4 1.0743 0.0692 29.2, 34.1 -1.88
BXD81 m 34.3 1.6078   5 0.71903 0.0469 32.9, 36.7 -1.05
BXD84 m 38.46 2.0852   5 0.93252 0.0542 35.7, 41.0 0.01
BXD87 m 38.8 1.9558   5 0.87464 0.0504 36.5, 41.5 0.1
BXD89 m 46.24 1.4792   5 0.66151 0.032 44.0, 47.8 2.0
BXD90 m 38.0 1.3229   3 0.76376 0.0348 36.5, 39.0 -0.1
C57BL/6J m 37.86 0.84439   5 0.37762 0.0223 37.1, 39.0 -0.14
DBA/2J m 36.6 2.4166   5 1.0807 0.066 34.2, 40.2 -0.46


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 34.76 1.0432859592 36.8225048644 32.6974951356
BXD100 m 43.8428571429 0.8817375673 45.5859919044 42.0997223813
BXD11 m 38.9 1.3468763818 41.5626823305 36.2373176695
BXD12 m 32.225 1.1664291624 34.5309505404 29.9190494596
BXD27 m 39.88 1.0432859592 41.9425048644 37.8174951356
BXD32 m 46.65 1.1664291624 48.9559505404 44.3440494596
BXD34 m 37.625 1.1664291624 39.9309505404 35.3190494596
BXD39 m 36.38 1.0432859592 38.4425048644 34.3174951356
BXD40 m 34.62 1.0432859592 36.6825048644 32.5574951356
BXD43 m 39.12 1.0432859592 41.1825048644 37.0574951356
BXD45 m 41.42 1.0432859592 43.4825048644 39.3574951356
BXD48 m 36.74 1.0432859592 38.8025048644 34.6774951356
BXD48a m 43.42 1.0432859592 45.4825048644 41.3574951356
BXD49 m 41.78 1.0432859592 43.8425048644 39.7174951356
BXD51 m 38.28 1.0432859592 40.3425048644 36.2174951356
BXD53 m 40.32 1.0432859592 42.3825048644 38.2574951356
BXD55 m 40.86 1.0432859592 42.9225048644 38.7974951356
BXD6 m 36.62 1.0432859592 38.6825048644 34.5574951356
BXD62 m 46.2 1.0432859592 48.2625048644 44.1374951356
BXD63 m 38.38 1.0432859592 40.4425048644 36.3174951356
BXD64 m 35.12 1.0432859592 37.1825048644 33.0574951356
BXD66 m 33.2333333333 0.7776194416 34.7706336936 31.6960329731
BXD67 m 38.96 1.0432859592 41.0225048644 36.8974951356
BXD69 m 34.66 1.0432859592 36.7225048644 32.5974951356
BXD73 m 43.52 1.0432859592 45.5825048644 41.4574951356
BXD75 m 36.75 1.1664291624 39.0559505404 34.4440494596
BXD77 m 33.3 1.0432859592 35.3625048644 31.2374951356
BXD79 m 37.76 1.0432859592 39.8225048644 35.6974951356
BXD8 m 31.05 1.1664291624 33.3559505404 28.7440494596
BXD81 m 34.3 1.0432859592 36.3625048644 32.2374951356
BXD84 m 38.46 1.0432859592 40.5225048644 36.3974951356
BXD87 m 38.8 1.0432859592 40.8625048644 36.7374951356
BXD89 m 46.24 1.0432859592 48.3025048644 44.1774951356
BXD90 m 38.0 1.3468763818 40.6626823305 35.3373176695
C57BL/6J m 37.86 1.0432859592 39.9225048644 35.7974951356
DBA/2J m 36.6 1.0432859592 38.6625048644 34.5374951356




  GWAS USING LINEAR MIXED MODELS