Project measure / variable:   Schoonjans1   small_intestine_length_CD

ID, description, units MPD:112871   small_intestine_length_CD   small intestine length   [cm]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure organ dimensions
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - small intestine length CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means36.938   cm
Median of the strain means36.475   cm
SD of the strain means± 3.1226
Coefficient of variation (CV)0.0845
Min–max range of strain means31.786   –   44.717   cm
Mean sample size per strain4.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 1690.5155 48.3004 10.9146 < 0.0001
Residuals 134 592.9899 4.4253


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 34.3 0.73937   4 0.36968 0.0216 33.2, 34.8 -0.84
BXD100 m 44.717 2.6604   6 1.0861 0.0595 41.3, 48.7 2.49
BXD11 m 39.825 1.8572   4 0.9286 0.0466 38.3, 42.3 0.92
BXD12 m 37.825 2.1869   4 1.0934 0.0578 35.8, 40.7 0.28
BXD27 m 39.65 1.6543   4 0.82714 0.0417 38.1, 41.9 0.87
BXD32 m 38.24 1.5241   5 0.68162 0.0399 35.7, 39.7 0.42
BXD34 m 40.26 1.695   5 0.75802 0.0421 38.0, 42.3 1.06
BXD39 m 34.88 2.0681   5 0.92488 0.0593 31.8, 36.8 -0.66
BXD40 m 32.76 1.4673   5 0.6562 0.0448 30.5, 34.4 -1.34
BXD43 m 35.833 1.4503   3 0.83732 0.0405 34.4, 37.3 -0.35
BXD45 m 36.575 2.8088   4 1.4044 0.0768 32.4, 38.5 -0.12
BXD48 m 38.36 2.5215   5 1.1277 0.0657 34.3, 41.1 0.46
BXD48a m 42.275 4.0492   4 2.0246 0.0958 38.2, 46.8 1.71
BXD49 m 40.425 3.9221   4 1.961 0.097 36.1, 45.0 1.12
BXD51 m 37.52 1.5643   5 0.69957 0.0417 36.2, 39.8 0.19
BXD53 m 39.88 1.969   5 0.88057 0.0494 37.8, 42.1 0.94
BXD55 m 39.88 2.6386   5 1.18 0.0662 37.3, 43.9 0.94
BXD6 m 39.02 1.0474   5 0.4684 0.0268 37.4, 40.3 0.67
BXD62 m 36.04 2.2468   5 1.0048 0.0623 32.5, 37.7 -0.29
BXD63 m 35.94 1.176   5 0.52593 0.0327 34.2, 37.3 -0.32
BXD64 m 33.5 1.9975   3 1.1533 0.0596 32.2, 35.8 -1.1
BXD66 m 33.3 2.2098   7 0.83524 0.0664 28.9, 35.7 -1.16
BXD67 m 36.375 0.49244   4 0.24622 0.0135 36.0, 37.1 -0.18
BXD69 m 33.32 2.5994   5 1.1625 0.078 30.5, 37.0 -1.16
BXD73 m 40.96 1.2661   5 0.56622 0.0309 39.2, 42.6 1.29
BXD75 m 33.42 2.0204   5 0.90355 0.0605 30.8, 35.5 -1.13
BXD77 m 34.32 1.4114   5 0.63119 0.0411 32.3, 35.9 -0.84
BXD79 m 34.52 1.5023   5 0.67186 0.0435 33.0, 36.7 -0.77
BXD8 m 31.786 2.0299   5 0.9078 0.0639 30.03, 35.3 -1.65
BXD81 m 33.45 1.8859   4 0.94296 0.0564 31.2, 35.2 -1.12
BXD84 m 36.34 3.1832   5 1.4236 0.0876 31.0, 39.2 -0.19
BXD87 m 31.98 1.033   5 0.46195 0.0323 30.7, 33.2 -1.59
BXD89 m 39.5 2.9791   5 1.3323 0.0754 35.5, 43.5 0.82
BXD90 m 38.78 1.9486   5 0.87144 0.0502 36.3, 41.6 0.59
C57BL/6J m 36.06 1.417   5 0.63372 0.0393 34.3, 37.7 -0.28
DBA/2J m 37.94 1.5176   5 0.67868 0.04 36.7, 40.4 0.32


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 34.3 1.0518196032 36.380315904 32.219684096
BXD100 m 44.7166666667 0.8588071097 46.4152374895 43.0180958438
BXD11 m 39.825 1.0518196032 41.905315904 37.744684096
BXD12 m 37.825 1.0518196032 39.905315904 35.744684096
BXD27 m 39.65 1.0518196032 41.730315904 37.569684096
BXD32 m 38.24 0.9407760531 40.1006911104 36.3793088896
BXD34 m 40.26 0.9407760531 42.1206911104 38.3993088896
BXD39 m 34.88 0.9407760531 36.7406911104 33.0193088896
BXD40 m 32.76 0.9407760531 34.6206911104 30.8993088896
BXD43 m 35.8333333333 1.2145366621 38.2354752277 33.431191439
BXD45 m 36.575 1.0518196032 38.655315904 34.494684096
BXD48 m 38.36 0.9407760531 40.2206911104 36.4993088896
BXD48a m 42.275 1.0518196032 44.355315904 40.194684096
BXD49 m 40.425 1.0518196032 42.505315904 38.344684096
BXD51 m 37.52 0.9407760531 39.3806911104 35.6593088896
BXD53 m 39.88 0.9407760531 41.7406911104 38.0193088896
BXD55 m 39.88 0.9407760531 41.7406911104 38.0193088896
BXD6 m 39.02 0.9407760531 40.8806911104 37.1593088896
BXD62 m 36.04 0.9407760531 37.9006911104 34.1793088896
BXD63 m 35.94 0.9407760531 37.8006911104 34.0793088896
BXD64 m 33.5 1.2145366621 35.9021418944 31.0978581056
BXD66 m 33.3 0.795100884 34.8725710087 31.7274289913
BXD67 m 36.375 1.0518196032 38.455315904 34.294684096
BXD69 m 33.32 0.9407760531 35.1806911104 31.4593088896
BXD73 m 40.96 0.9407760531 42.8206911104 39.0993088896
BXD75 m 33.42 0.9407760531 35.2806911104 31.5593088896
BXD77 m 34.32 0.9407760531 36.1806911104 32.4593088896
BXD79 m 34.52 0.9407760531 36.3806911104 32.6593088896
BXD8 m 31.786 0.9407760531 33.6466911104 29.9253088896
BXD81 m 33.45 1.0518196032 35.530315904 31.369684096
BXD84 m 36.34 0.9407760531 38.2006911104 34.4793088896
BXD87 m 31.98 0.9407760531 33.8406911104 30.1193088896
BXD89 m 39.5 0.9407760531 41.3606911104 37.6393088896
BXD90 m 38.78 0.9407760531 40.6406911104 36.9193088896
C57BL/6J m 36.06 0.9407760531 37.9206911104 34.1993088896
DBA/2J m 37.94 0.9407760531 39.8006911104 36.0793088896




  GWAS USING LINEAR MIXED MODELS