Project measure / variable:   Schoonjans1   caecum_wt_CD

ID, description, units MPD:112869   caecum_wt_CD   cecum weight   [g]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Schoonjans1 - cecum weight CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.42969   g
Median of the strain means0.42377   g
SD of the strain means± 0.10413
Coefficient of variation (CV)0.2423
Min–max range of strain means0.28744   –   0.88078   g
Mean sample size per strain4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 1.8869 0.0539 9.5545 < 0.0001
Residuals 130 0.7335 0.0056


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.35077 0.03322   4 0.01661 0.0947 0.3032, 0.3758 -0.76
BXD100 m 0.3991 0.07654   6 0.03125 0.1918 0.2659, 0.48 -0.29
BXD11 m 0.44333 0.0057735   3 0.00333333 0.013 0.44, 0.45 0.13
BXD12 m 0.41067 0.0444   4 0.0222 0.1081 0.3709, 0.4521 -0.18
BXD27 m 0.435 0.04796   4 0.02398 0.1102 0.38, 0.48 0.05
BXD32 m 0.338 0.04147   5 0.01855 0.1227 0.29, 0.39 -0.88
BXD34 m 0.54848 0.02168   5 0.0096943 0.0395 0.5127, 0.571 1.14
BXD39 m 0.456 0.05683   5 0.02542 0.1246 0.37, 0.52 0.25
BXD40 m 0.49384 0.07929   5 0.03546 0.1606 0.4071, 0.5668 0.62
BXD43 m 0.4272 0.11549   3 0.06668 0.2703 0.31, 0.5409 -0.02
BXD45 m 0.385 0.05802   4 0.02901 0.1507 0.33, 0.46 -0.43
BXD48 m 0.346 0.05727   5 0.02561 0.1655 0.26, 0.4 -0.8
BXD48a m 0.4565 0.02548   4 0.01274 0.0558 0.43, 0.49 0.26
BXD49 m 0.59435 0.06972   4 0.03486 0.1173 0.5043, 0.6735 1.58
BXD51 m 0.306 0.04037   5 0.01806 0.1319 0.25, 0.35 -1.19
BXD53 m 0.488 0.0497   5 0.02223 0.1018 0.43, 0.56 0.56
BXD55 m 0.44706 0.03559   5 0.01592 0.0796 0.4053, 0.4938 0.17
BXD6 m 0.88078 0.16618   5 0.07432 0.1887 0.671, 1.1104 4.33
BXD62 m 0.28744 0.0666   5 0.02978 0.2317 0.2161, 0.3665 -1.37
BXD63 m 0.502 0.24489   5 0.10952 0.4878 0.29, 0.92 0.69
BXD64 m 0.44667 0.03215   3 0.01856 0.072 0.41, 0.47 0.16
BXD66 m 0.29637 0.04394   7 0.01661 0.1483 0.27, 0.39 -1.28
BXD67 m 0.435 0.03317   4 0.01658 0.0762 0.39, 0.47 0.05
BXD69 m 0.344 0.07335   5 0.0328 0.2132 0.23, 0.4 -0.82
BXD73 m 0.41807 0.04197   4 0.02099 0.1004 0.36, 0.4546 -0.11
BXD75 m 0.398 0.03271   5 0.01463 0.0822 0.35, 0.44 -0.3
BXD77 m 0.42502 0.0367   5 0.01641 0.0863 0.3762, 0.4752 -0.04
BXD79 m 0.3223 0.04276   5 0.01912 0.1327 0.2752, 0.3768 -1.03
BXD8 m 0.388 0.04658   5 0.02083 0.1201 0.32, 0.45 -0.4
BXD81 m 0.3679 0.0062086   4 0.0031043 0.0169 0.3594, 0.3742 -0.59
BXD84 m 0.514 0.10455   5 0.04675 0.2034 0.4, 0.63 0.81
BXD87 m 0.3838 0.05803   5 0.02595 0.1512 0.291, 0.445 -0.44
BXD89 m 0.43 0.03651   4 0.01826 0.0849 0.39, 0.47 0.0
BXD90 m 0.4975 0.06449   4 0.03224 0.1296 0.42, 0.56 0.65
C57BL/6J m 0.42252 0.04453   5 0.01991 0.1054 0.388, 0.4945 -0.07
DBA/2J m 0.384 0.09236   5 0.0413 0.2405 0.27, 0.52 -0.44


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.350775 0.0375585586 0.4250801164 0.2764698836
BXD100 m 0.3991 0.0306664347 0.4597698735 0.3384301265
BXD11 m 0.4433333333 0.0433688878 0.5291334912 0.3575331755
BXD12 m 0.410675 0.0375585586 0.4849801164 0.3363698836
BXD27 m 0.435 0.0375585586 0.5093051164 0.3606948836
BXD32 m 0.338 0.0335933961 0.4044605165 0.2715394835
BXD34 m 0.54848 0.0335933961 0.6149405165 0.4820194835
BXD39 m 0.456 0.0335933961 0.5224605165 0.3895394835
BXD40 m 0.49384 0.0335933961 0.5603005165 0.4273794835
BXD43 m 0.4272 0.0433688878 0.5130001579 0.3413998421
BXD45 m 0.385 0.0375585586 0.4593051164 0.3106948836
BXD48 m 0.346 0.0335933961 0.4124605165 0.2795394835
BXD48a m 0.4565 0.0375585586 0.5308051164 0.3821948836
BXD49 m 0.59435 0.0375585586 0.6686551164 0.5200448836
BXD51 m 0.306 0.0335933961 0.3724605165 0.2395394835
BXD53 m 0.488 0.0335933961 0.5544605165 0.4215394835
BXD55 m 0.44706 0.0335933961 0.5135205165 0.3805994835
BXD6 m 0.88078 0.0335933961 0.9472405165 0.8143194835
BXD62 m 0.28744 0.0335933961 0.3539005165 0.2209794835
BXD63 m 0.502 0.0335933961 0.5684605165 0.4355394835
BXD64 m 0.4466666667 0.0433688878 0.5324668245 0.3608665088
BXD66 m 0.2963714286 0.0283916016 0.3525408169 0.2402020403
BXD67 m 0.435 0.0375585586 0.5093051164 0.3606948836
BXD69 m 0.344 0.0335933961 0.4104605165 0.2775394835
BXD73 m 0.418075 0.0375585586 0.4923801164 0.3437698836
BXD75 m 0.398 0.0335933961 0.4644605165 0.3315394835
BXD77 m 0.42502 0.0335933961 0.4914805165 0.3585594835
BXD79 m 0.3223 0.0335933961 0.3887605165 0.2558394835
BXD8 m 0.388 0.0335933961 0.4544605165 0.3215394835
BXD81 m 0.3679 0.0375585586 0.4422051164 0.2935948836
BXD84 m 0.514 0.0335933961 0.5804605165 0.4475394835
BXD87 m 0.3838 0.0335933961 0.4502605165 0.3173394835
BXD89 m 0.43 0.0375585586 0.5043051164 0.3556948836
BXD90 m 0.4975 0.0375585586 0.5718051164 0.4231948836
C57BL/6J m 0.42252 0.0335933961 0.4889805165 0.3560594835
DBA/2J m 0.384 0.0335933961 0.4504605165 0.3175394835




  GWAS USING LINEAR MIXED MODELS