Project measure / variable:   Schoonjans1   soleus_wt_HFD

ID, description, units MPD:112868   soleus_wt_HFD   soleus muscle weight   [g]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   35 strains     sex: m     age: 29wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Schoonjans1 - soleus muscle weight HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested35 strains
Mean of the strain means0.01766   g
Median of the strain means0.01733   g
SD of the strain means± 0.00299214
Coefficient of variation (CV)0.1694
Min–max range of strain means0.01292   –   0.02542   g
Mean sample size per strain4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 34 0.0015 0.0 7.8998 < 0.0001
Residuals 134 0.0008 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.01588 0.00157385   5 0.00070385 0.0991 0.014, 0.0178 -0.59
BXD100 m 0.01933 0.00209444   6 0.00085505 0.1083 0.0164, 0.0209 0.56
BXD11 m 0.01733 0.00306649   3 0.00177044 0.1769 0.0138, 0.0193 -0.11
BXD12 m 0.01313 0.0026949   4 0.00134745 0.2053 0.0107, 0.0168 -1.51
BXD27 m 0.0201 0.00198242   5 0.00088657 0.0986 0.0168, 0.0218 0.82
BXD32 m 0.01407 0.00125033   3 0.00072188 0.0889 0.0128, 0.0153 -1.2
BXD34 m 0.01292 0.00101119   4 0.00050559 0.0782 0.012, 0.0138 -1.58
BXD39 m 0.0224 0.00191311   5 0.00085557 0.0854 0.0193, 0.0241 1.58
BXD40 m 0.01746 0.00162265   5 0.00072567 0.0929 0.0158, 0.0199 -0.07
BXD43 m 0.02286 0.00813314   5 0.00363725 0.3558 0.0168, 0.037 1.74
BXD45 m 0.0196 0.00254558   4 0.00127279 0.1299 0.0162, 0.022 0.65
BXD48 m 0.0207 0.00232056   5 0.00103779 0.1121 0.0168, 0.0227 1.02
BXD48a m 0.01782 0.0022731   5 0.00101656 0.1276 0.0148, 0.0207 0.05
BXD51 m 0.0174 0.00096954   5 0.00043359 0.0557 0.0166, 0.019 -0.09
BXD53 m 0.02542 0.00161462   5 0.00072208 0.0635 0.0236, 0.0277 2.59
BXD55 m 0.01756 0.00136125   5 0.00060877 0.0775 0.0158, 0.0196 -0.03
BXD6 m 0.0191 0.00234201   5 0.00104738 0.1226 0.0165, 0.0223 0.48
BXD62 m 0.0179 0.0021783   5 0.00097417 0.1217 0.0143, 0.0198 0.08
BXD63 m 0.01574 0.00218701   5 0.00097806 0.1389 0.0126, 0.0179 -0.64
BXD64 m 0.0162 0.00044721   5 0.0002 0.0276 0.016, 0.017 -0.49
BXD66 m 0.01309 0.00123232   9 0.00041077 0.0942 0.0115, 0.0146 -1.53
BXD67 m 0.0165 0.00246577   5 0.00110272 0.1494 0.0123, 0.0187 -0.39
BXD69 m 0.01576 0.00205134   5 0.00091739 0.1302 0.0133, 0.0182 -0.63
BXD73 m 0.0171 0.00173638   5 0.00077653 0.1015 0.0148, 0.0187 -0.19
BXD75 m 0.01807 0.00138173   4 0.00069086 0.0764 0.0161, 0.0193 0.14
BXD77 m 0.01592 0.00143073   5 0.00063984 0.0899 0.0145, 0.0177 -0.58
BXD79 m 0.01658 0.00200923   5 0.00089855 0.1212 0.014, 0.0189 -0.36
BXD8 m 0.01635 0.0016052   4 0.0008026 0.0982 0.0144, 0.0179 -0.44
BXD81 m 0.01478 0.00146526   5 0.00065529 0.0991 0.0133, 0.0167 -0.96
BXD84 m 0.02044 0.00190342   5 0.00085123 0.0931 0.0178, 0.0231 0.93
BXD87 m 0.01908 0.00090111   5 0.00040299 0.0472 0.018, 0.0198 0.48
BXD89 m 0.01708 0.00365199   5 0.00163322 0.2138 0.014, 0.0231 -0.19
BXD90 m 0.01703 0.003073   3 0.0017742 0.1804 0.0142, 0.0203 -0.21
C57BL/6J m 0.0238 0.00212603   5 0.00095079 0.0893 0.0225, 0.0275 2.05
DBA/2J m 0.01354 0.00205256   5 0.00091793 0.1516 0.0114, 0.0157 -1.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.01588 0.0010684504 0.0179932086 0.0137667914
BXD100 m 0.0193333333 0.0009753573 0.0212624201 0.0174042466
BXD11 m 0.0173333333 0.0013793635 0.0200614739 0.0146051927
BXD12 m 0.013125 0.0011945638 0.0154876391 0.0107623609
BXD27 m 0.0201 0.0010684504 0.0222132086 0.0179867914
BXD32 m 0.0140666667 0.0013793635 0.0167948073 0.0113385261
BXD34 m 0.012925 0.0011945638 0.0152876391 0.0105623609
BXD39 m 0.0224 0.0010684504 0.0245132086 0.0202867914
BXD40 m 0.01746 0.0010684504 0.0195732086 0.0153467914
BXD43 m 0.02286 0.0010684504 0.0249732086 0.0207467914
BXD45 m 0.0196 0.0011945638 0.0219626391 0.0172373609
BXD48 m 0.0207 0.0010684504 0.0228132086 0.0185867914
BXD48a m 0.01782 0.0010684504 0.0199332086 0.0157067914
BXD51 m 0.0174 0.0010684504 0.0195132086 0.0152867914
BXD53 m 0.02542 0.0010684504 0.0275332086 0.0233067914
BXD55 m 0.01756 0.0010684504 0.0196732086 0.0154467914
BXD6 m 0.0191 0.0010684504 0.0212132086 0.0169867914
BXD62 m 0.0179 0.0010684504 0.0200132086 0.0157867914
BXD63 m 0.01574 0.0010684504 0.0178532086 0.0136267914
BXD64 m 0.0162 0.0010684504 0.0183132086 0.0140867914
BXD66 m 0.0130888889 0.0007963759 0.0146639816 0.0115137962
BXD67 m 0.0165 0.0010684504 0.0186132086 0.0143867914
BXD69 m 0.01576 0.0010684504 0.0178732086 0.0136467914
BXD73 m 0.0171 0.0010684504 0.0192132086 0.0149867914
BXD75 m 0.018075 0.0011945638 0.0204376391 0.0157123609
BXD77 m 0.01592 0.0010684504 0.0180332086 0.0138067914
BXD79 m 0.01658 0.0010684504 0.0186932086 0.0144667914
BXD8 m 0.01635 0.0011945638 0.0187126391 0.0139873609
BXD81 m 0.01478 0.0010684504 0.0168932086 0.0126667914
BXD84 m 0.02044 0.0010684504 0.0225532086 0.0183267914
BXD87 m 0.01908 0.0010684504 0.0211932086 0.0169667914
BXD89 m 0.01708 0.0010684504 0.0191932086 0.0149667914
BXD90 m 0.0170333333 0.0013793635 0.0197614739 0.0143051927
C57BL/6J m 0.0238 0.0010684504 0.0259132086 0.0216867914
DBA/2J m 0.01354 0.0010684504 0.0156532086 0.0114267914




  GWAS USING LINEAR MIXED MODELS