Project measure / variable:   Schoonjans1   gastroc_wt_HFD

ID, description, units MPD:112866   gastroc_wt_HFD   gastrocnemius muscle weight   [g]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   35 strains     sex: m     age: 29wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Schoonjans1 - gastrocnemius muscle weight HFD

BXD39BXD100BXD43BXD53C57BL/6JBXD73BXD55BXD48BXD1BXD48aBXD62BXD45BXD89BXD51BXD84BXD67BXD87BXD63BXD75BXD40BXD12BXD69BXD27BXD64BXD79BXD34BXD32BXD8BXD77BXD81BXD6DBA/2JBXD11BXD66BXD90 g 0.240.260.280.300.320.340.360.380.40femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested35 strains
Mean of the strain means0.31351   g
Median of the strain means0.31532   g
SD of the strain means± 0.02776
Coefficient of variation (CV)0.0886
Min–max range of strain means0.26717   –   0.37684   g
Mean sample size per strain4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 34 0.1312 0.0039 7.2841 < 0.0001
Residuals 137 0.0726 0.0005


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 35 (35)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 0.34068 0.02776   5 0.01242 0.0815 0.3088, 0.374 0.98
BXD100 m 0.35824 0.02795   7 0.01057 0.078 0.3216, 0.4104 1.61
BXD11 m 0.2832 0.02669   3 0.01541 0.0943 0.2524, 0.2996 -1.09
BXD12 m 0.29895 0.02428   4 0.01214 0.0812 0.2633, 0.3171 -0.52
BXD27 m 0.29448 0.02478   5 0.01108 0.0841 0.2507, 0.3091 -0.69
BXD32 m 0.28958 0.0257   4 0.01285 0.0888 0.2577, 0.3164 -0.86
BXD34 m 0.2917 0.00772399   4 0.00386199 0.0265 0.2814, 0.3 -0.79
BXD39 m 0.37684 0.025   5 0.01118 0.0663 0.3438, 0.408 2.28
BXD40 m 0.30336 0.0153   5 0.00684431 0.0504 0.2902, 0.3269 -0.37
BXD43 m 0.35362 0.03878   5 0.01734 0.1097 0.31, 0.41 1.44
BXD45 m 0.32282 0.02523   5 0.01128 0.0782 0.2952, 0.3581 0.34
BXD48 m 0.34324 0.03124   5 0.01397 0.091 0.295, 0.3741 1.07
BXD48a m 0.3306 0.02037   5 0.00910928 0.0616 0.3007, 0.3495 0.62
BXD51 m 0.31748 0.01225   5 0.00548036 0.0386 0.2997, 0.3277 0.14
BXD53 m 0.35314 0.00943255   5 0.00421836 0.0267 0.3421, 0.3637 1.43
BXD55 m 0.34416 0.02356   5 0.01054 0.0685 0.3194, 0.3802 1.1
BXD6 m 0.28332 0.02042   5 0.00912997 0.0721 0.2587, 0.3081 -1.09
BXD62 m 0.3255 0.03168   5 0.01417 0.0973 0.2734, 0.3582 0.43
BXD63 m 0.31532 0.01993   5 0.00891181 0.0632 0.2947, 0.3434 0.07
BXD64 m 0.294 0.01673   5 0.00748331 0.0569 0.27, 0.31 -0.7
BXD66 m 0.27958 0.02042   9 0.00680522 0.073 0.2545, 0.3092 -1.22
BXD67 m 0.31578 0.0208   5 0.00930131 0.0659 0.2916, 0.3467 0.08
BXD69 m 0.29872 0.02736   5 0.01224 0.0916 0.2597, 0.3281 -0.53
BXD73 m 0.34758 0.02198   5 0.00983175 0.0633 0.3265, 0.3764 1.23
BXD75 m 0.30735 0.02353   4 0.01176 0.0765 0.2765, 0.3299 -0.22
BXD77 m 0.28582 0.0122   5 0.00545595 0.0427 0.2713, 0.2973 -1.0
BXD79 m 0.29184 0.01834   5 0.00820113 0.0628 0.2754, 0.3234 -0.78
BXD8 m 0.28613 0.01919   4 0.00959508 0.0671 0.2652, 0.3106 -0.99
BXD81 m 0.2851 0.0174   5 0.00778158 0.061 0.2719, 0.3046 -1.02
BXD84 m 0.31662 0.00937321   5 0.00419183 0.0296 0.3029, 0.3256 0.11
BXD87 m 0.31566 0.01276   5 0.00570479 0.0404 0.2995, 0.3336 0.08
BXD89 m 0.31992 0.0337   5 0.01507 0.1053 0.2644, 0.353 0.23
BXD90 m 0.26717 0.0337   3 0.01946 0.1261 0.2318, 0.2989 -1.67
C57BL/6J m 0.35216 0.01102   5 0.00493048 0.0313 0.3365, 0.3669 1.39
DBA/2J m 0.28328 0.03032   5 0.01356 0.107 0.2362, 0.3183 -1.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.34068 0.0102946831 0.3610370277 0.3203229723
BXD100 m 0.3582428571 0.0087005952 0.3754476857 0.3410380286
BXD11 m 0.2832 0.0132903787 0.3094808097 0.2569191903
BXD12 m 0.29895 0.0115098056 0.3217098488 0.2761901512
BXD27 m 0.29448 0.0102946831 0.3148370277 0.2741229723
BXD32 m 0.289575 0.0115098056 0.3123348488 0.2668151512
BXD34 m 0.2917 0.0115098056 0.3144598488 0.2689401512
BXD39 m 0.37684 0.0102946831 0.3971970277 0.3564829723
BXD40 m 0.30336 0.0102946831 0.3237170277 0.2830029723
BXD43 m 0.35362 0.0102946831 0.3739770277 0.3332629723
BXD45 m 0.32282 0.0102946831 0.3431770277 0.3024629723
BXD48 m 0.34324 0.0102946831 0.3635970277 0.3228829723
BXD48a m 0.3306 0.0102946831 0.3509570277 0.3102429723
BXD51 m 0.31748 0.0102946831 0.3378370277 0.2971229723
BXD53 m 0.35314 0.0102946831 0.3734970277 0.3327829723
BXD55 m 0.34416 0.0102946831 0.3645170277 0.3238029723
BXD6 m 0.28332 0.0102946831 0.3036770277 0.2629629723
BXD62 m 0.3255 0.0102946831 0.3458570277 0.3051429723
BXD63 m 0.31532 0.0102946831 0.3356770277 0.2949629723
BXD64 m 0.294 0.0102946831 0.3143570277 0.2736429723
BXD66 m 0.2795777778 0.0076732037 0.2947510103 0.2644045452
BXD67 m 0.31578 0.0102946831 0.3361370277 0.2954229723
BXD69 m 0.29872 0.0102946831 0.3190770277 0.2783629723
BXD73 m 0.34758 0.0102946831 0.3679370277 0.3272229723
BXD75 m 0.30735 0.0115098056 0.3301098488 0.2845901512
BXD77 m 0.28582 0.0102946831 0.3061770277 0.2654629723
BXD79 m 0.29184 0.0102946831 0.3121970277 0.2714829723
BXD8 m 0.286125 0.0115098056 0.3088848488 0.2633651512
BXD81 m 0.2851 0.0102946831 0.3054570277 0.2647429723
BXD84 m 0.31662 0.0102946831 0.3369770277 0.2962629723
BXD87 m 0.31566 0.0102946831 0.3360170277 0.2953029723
BXD89 m 0.31992 0.0102946831 0.3402770277 0.2995629723
BXD90 m 0.2671666667 0.0132903787 0.2934474764 0.240885857
C57BL/6J m 0.35216 0.0102946831 0.3725170277 0.3318029723
DBA/2J m 0.28328 0.0102946831 0.3036370277 0.2629229723




  GWAS USING LINEAR MIXED MODELS

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