Project measure / variable:   Schoonjans1   gastroc_wt_CD

ID, description, units MPD:112865   gastroc_wt_CD   gastrocnemius muscle weight   [g]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   35 strains     sex: m     age: 29wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Schoonjans1 - gastrocnemius muscle weight CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested35 strains
Mean of the strain means0.29411   g
Median of the strain means0.2932   g
SD of the strain means± 0.02547
Coefficient of variation (CV)0.0866
Min–max range of strain means0.23515   –   0.34622   g
Mean sample size per strain4.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 34 0.1037 0.003 8.1431 < 0.0001
Residuals 131 0.0491 0.0004


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.284 0.00751044   4 0.00375522 0.0264 0.2786, 0.2949 -0.4
BXD100 m 0.32153 0.01009   6 0.00411903 0.0314 0.3042, 0.3334 1.08
BXD11 m 0.2775 0.01708   4 0.00853913 0.0615 0.26, 0.3 -0.65
BXD12 m 0.3387 0.03586   4 0.01793 0.1059 0.2854, 0.3605 1.75
BXD27 m 0.27255 0.01273   4 0.0063656 0.0467 0.2573, 0.2833 -0.85
BXD32 m 0.28434 0.01817   5 0.00812715 0.0639 0.27, 0.3155 -0.38
BXD34 m 0.34622 0.01129   5 0.00505128 0.0326 0.331, 0.3573 2.05
BXD39 m 0.32992 0.03389   5 0.01516 0.1027 0.2952, 0.3778 1.41
BXD40 m 0.26614 0.01333   5 0.00596126 0.0501 0.2455, 0.2762 -1.1
BXD43 m 0.3025 0.02919   3 0.01685 0.0965 0.27, 0.3265 0.33
BXD45 m 0.305 0.01915   4 0.00957427 0.0628 0.29, 0.33 0.43
BXD48 m 0.30396 0.01642   5 0.00734443 0.054 0.2818, 0.3262 0.39
BXD48a m 0.32965 0.00834925   4 0.00417463 0.0253 0.3224, 0.3392 1.4
BXD51 m 0.2932 0.00715157   5 0.00319828 0.0244 0.2856, 0.3023 -0.04
BXD53 m 0.328 0.02588   5 0.01158 0.0789 0.3, 0.36 1.33
BXD55 m 0.30982 0.00887733   5 0.00397006 0.0287 0.2995, 0.3228 0.62
BXD6 m 0.26808 0.01275   5 0.0057024 0.0476 0.2544, 0.2859 -1.02
BXD62 m 0.28344 0.02228   5 0.00996291 0.0786 0.2509, 0.3109 -0.42
BXD63 m 0.29548 0.01748   5 0.00781815 0.0592 0.269, 0.3177 0.05
BXD64 m 0.28333 0.01155   3 0.00666667 0.0408 0.27, 0.29 -0.42
BXD66 m 0.27576 0.02054   7 0.00776521 0.0745 0.2488, 0.3111 -0.72
BXD67 m 0.29645 0.02816   4 0.01408 0.095 0.2752, 0.3379 0.09
BXD69 m 0.2941 0.02346   5 0.01049 0.0798 0.2612, 0.3176 0.0
BXD73 m 0.30792 0.01291   5 0.00577394 0.0419 0.2911, 0.3198 0.54
BXD75 m 0.29276 0.00665004   5 0.00297399 0.0227 0.2821, 0.2998 -0.05
BXD77 m 0.30558 0.01195   5 0.00534532 0.0391 0.2879, 0.3206 0.45
BXD79 m 0.26812 0.01489   5 0.00665758 0.0555 0.2503, 0.285 -1.02
BXD8 m 0.278 0.01095   5 0.00489898 0.0394 0.27, 0.29 -0.63
BXD81 m 0.23515 0.01414   4 0.00707066 0.0601 0.2179, 0.2482 -2.31
BXD84 m 0.29394 0.02637   5 0.01179 0.0897 0.2605, 0.3228 -0.01
BXD87 m 0.27302 0.02093   5 0.00936165 0.0767 0.249, 0.291 -0.83
BXD89 m 0.27714 0.0238   5 0.01064 0.0859 0.2505, 0.3153 -0.67
BXD90 m 0.25076 0.01236   5 0.00552726 0.0493 0.233, 0.2651 -1.7
C57BL/6J m 0.33822 0.03004   5 0.01343 0.0888 0.3104, 0.3853 1.73
DBA/2J m 0.28348 0.02777   5 0.01242 0.0979 0.2612, 0.3312 -0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.284 0.0096751394 0.3031397337 0.2648602663
BXD100 m 0.3215333333 0.0078997183 0.3371608604 0.3059058062
BXD11 m 0.2775 0.0096751394 0.2966397337 0.2583602663
BXD12 m 0.3387 0.0096751394 0.3578397337 0.3195602663
BXD27 m 0.27255 0.0096751394 0.2916897337 0.2534102663
BXD32 m 0.28434 0.0086537078 0.3014590982 0.2672209018
BXD34 m 0.34622 0.0086537078 0.3633390982 0.3291009018
BXD39 m 0.32992 0.0086537078 0.3470390982 0.3128009018
BXD40 m 0.26614 0.0086537078 0.2832590982 0.2490209018
BXD43 m 0.3025 0.0111718887 0.3246006608 0.2803993392
BXD45 m 0.305 0.0096751394 0.3241397337 0.2858602663
BXD48 m 0.30396 0.0086537078 0.3210790982 0.2868409018
BXD48a m 0.32965 0.0096751394 0.3487897337 0.3105102663
BXD51 m 0.2932 0.0086537078 0.3103190982 0.2760809018
BXD53 m 0.328 0.0086537078 0.3451190982 0.3108809018
BXD55 m 0.30982 0.0086537078 0.3269390982 0.2927009018
BXD6 m 0.26808 0.0086537078 0.2851990982 0.2509609018
BXD62 m 0.28344 0.0086537078 0.3005590982 0.2663209018
BXD63 m 0.29548 0.0086537078 0.3125990982 0.2783609018
BXD64 m 0.2833333333 0.0111718887 0.3054339941 0.2612326726
BXD66 m 0.2757571429 0.0073137179 0.2902254216 0.2612888642
BXD67 m 0.29645 0.0096751394 0.3155897337 0.2773102663
BXD69 m 0.2941 0.0086537078 0.3112190982 0.2769809018
BXD73 m 0.30792 0.0086537078 0.3250390982 0.2908009018
BXD75 m 0.29276 0.0086537078 0.3098790982 0.2756409018
BXD77 m 0.30558 0.0086537078 0.3226990982 0.2884609018
BXD79 m 0.26812 0.0086537078 0.2852390982 0.2510009018
BXD8 m 0.278 0.0086537078 0.2951190982 0.2608809018
BXD81 m 0.23515 0.0096751394 0.2542897337 0.2160102663
BXD84 m 0.29394 0.0086537078 0.3110590982 0.2768209018
BXD87 m 0.27302 0.0086537078 0.2901390982 0.2559009018
BXD89 m 0.27714 0.0086537078 0.2942590982 0.2600209018
BXD90 m 0.25076 0.0086537078 0.2678790982 0.2336409018
C57BL/6J m 0.33822 0.0086537078 0.3553390982 0.3211009018
DBA/2J m 0.28348 0.0086537078 0.3005990982 0.2663609018




  GWAS USING LINEAR MIXED MODELS