Project measure / variable:   Schoonjans1   epid_fat_wt_CD

ID, description, units MPD:112863   epid_fat_wt_CD   epididymal fat pad weight   [g]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Schoonjans1 - epididymal fat pad weight CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means1.0416   g
Median of the strain means1.0541   g
SD of the strain means± 0.46158
Coefficient of variation (CV)0.4431
Min–max range of strain means0.338   –   2.34   g
Mean sample size per strain4.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 34.8424 0.9955 5.2817 < 0.0001
Residuals 134 25.2564 0.1885


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.35583 0.1728   4 0.0864 0.4856 0.2268, 0.6092 -1.49
BXD100 m 1.4926 0.39194   6 0.16001 0.2626 1.0415, 1.99 0.98
BXD11 m 1.8825 0.56417   4 0.28209 0.2997 1.19, 2.4 1.82
BXD12 m 0.41115 0.03134   4 0.01567 0.0762 0.38, 0.4485 -1.37
BXD27 m 1.335 0.34876   4 0.17438 0.2612 0.92, 1.73 0.64
BXD32 m 0.58 0.48337   5 0.21617 0.8334 0.14, 1.18 -1.0
BXD34 m 1.2021 0.32422   5 0.145 0.2697 0.7164, 1.5775 0.35
BXD39 m 1.524 0.49908   5 0.22319 0.3275 1.1, 2.32 1.05
BXD40 m 1.0024 0.28379   5 0.12692 0.2831 0.5232, 1.2657 -0.08
BXD43 m 0.76167 0.38269   3 0.22095 0.5024 0.494, 1.2 -0.61
BXD45 m 0.865 0.34025   4 0.17012 0.3933 0.46, 1.29 -0.38
BXD48 m 1.12 0.60046   5 0.26853 0.5361 0.54, 2.05 0.17
BXD48a m 1.3725 0.74231   4 0.37116 0.5408 0.6, 2.21 0.72
BXD49 m 0.53063 0.09492   4 0.04746 0.1789 0.4535, 0.65 -1.11
BXD51 m 2.34 0.78673   5 0.35184 0.3362 1.7, 3.7 2.81
BXD53 m 0.8 0.17421   5 0.07791 0.2178 0.64, 1.09 -0.52
BXD55 m 0.52228 0.1651   5 0.07384 0.3161 0.3128, 0.7739 -1.13
BXD6 m 0.91618 0.31899   5 0.14266 0.3482 0.5779, 1.3438 -0.27
BXD62 m 1.0463 0.3834   5 0.17146 0.3664 0.3795, 1.337 0.01
BXD63 m 1.132 0.53223   5 0.23802 0.4702 0.45, 1.82 0.2
BXD64 m 1.41 0.18   3 0.10392 0.1277 1.23, 1.59 0.8
BXD66 m 1.1061 0.7995   7 0.30218 0.7228 0.23, 2.3577 0.14
BXD67 m 1.255 0.37278   4 0.18639 0.297 0.73, 1.6 0.46
BXD69 m 1.2834 0.22206   5 0.09931 0.173 0.9, 1.47 0.52
BXD73 m 0.64484 0.18412   5 0.08234 0.2855 0.37, 0.86 -0.86
BXD75 m 1.41 0.193   5 0.08631 0.1369 1.16, 1.69 0.8
BXD77 m 1.1243 0.12202   5 0.05457 0.1085 0.9606, 1.2453 0.18
BXD79 m 1.8434 0.46879   5 0.20965 0.2543 1.2132, 2.28 1.74
BXD8 m 0.338 0.0614   5 0.02746 0.1817 0.25, 0.41 -1.52
BXD81 m 0.70665 0.91766   4 0.45883 1.2986 0.1485, 2.0789 -0.73
BXD84 m 0.986 0.17068   5 0.07633 0.1731 0.83, 1.27 -0.12
BXD87 m 0.3608 0.21213   5 0.09487 0.5879 0.073, 0.621 -1.47
BXD89 m 0.7 0.14107   5 0.06309 0.2015 0.58, 0.89 -0.74
BXD90 m 1.062 0.41823   5 0.18704 0.3938 0.74, 1.77 0.04
C57BL/6J m 1.3681 0.55641   5 0.24884 0.4067 0.9043, 2.3295 0.71
DBA/2J m 0.708 0.55061   5 0.24624 0.7777 0.12, 1.26 -0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.355825 0.2170716784 0.7851549568 -0.0735049568
BXD100 m 1.4926333333 0.1772382832 1.8431797751 1.1420868915
BXD11 m 1.8825 0.2170716784 2.3118299568 1.4531700432
BXD12 m 0.41115 0.2170716784 0.8404799568 -0.0181799568
BXD27 m 1.335 0.2170716784 1.7643299568 0.9056700432
BXD32 m 0.58 0.1941548115 0.9640043873 0.1959956127
BXD34 m 1.2021 0.1941548115 1.5861043873 0.8180956127
BXD39 m 1.524 0.1941548115 1.9080043873 1.1399956127
BXD40 m 1.00244 0.1941548115 1.3864443873 0.6184356127
BXD43 m 0.7616666667 0.2506527839 1.2574141989 0.2659191344
BXD45 m 0.865 0.2170716784 1.2943299568 0.4356700432
BXD48 m 1.12 0.1941548115 1.5040043873 0.7359956127
BXD48a m 1.3725 0.2170716784 1.8018299568 0.9431700432
BXD49 m 0.530625 0.2170716784 0.9599549568 0.1012950432
BXD51 m 2.34 0.1941548115 2.7240043873 1.9559956127
BXD53 m 0.8 0.1941548115 1.1840043873 0.4159956127
BXD55 m 0.52228 0.1941548115 0.9062843873 0.1382756127
BXD6 m 0.91618 0.1941548115 1.3001843873 0.5321756127
BXD62 m 1.04626 0.1941548115 1.4302643873 0.6622556127
BXD63 m 1.132 0.1941548115 1.5160043873 0.7479956127
BXD64 m 1.41 0.2506527839 1.9057475323 0.9142524677
BXD66 m 1.1061 0.164090765 1.4306429417 0.7815570583
BXD67 m 1.255 0.2170716784 1.6843299568 0.8256700432
BXD69 m 1.2834 0.1941548115 1.6674043873 0.8993956127
BXD73 m 0.64484 0.1941548115 1.0288443873 0.2608356127
BXD75 m 1.41 0.1941548115 1.7940043873 1.0259956127
BXD77 m 1.12426 0.1941548115 1.5082643873 0.7402556127
BXD79 m 1.84344 0.1941548115 2.2274443873 1.4594356127
BXD8 m 0.338 0.1941548115 0.7220043873 -0.0460043873
BXD81 m 0.70665 0.2170716784 1.1359799568 0.2773200432
BXD84 m 0.986 0.1941548115 1.3700043873 0.6019956127
BXD87 m 0.3608 0.1941548115 0.7448043873 -0.0232043873
BXD89 m 0.7 0.1941548115 1.0840043873 0.3159956127
BXD90 m 1.062 0.1941548115 1.4460043873 0.6779956127
C57BL/6J m 1.36808 0.1941548115 1.7520843873 0.9840756127
DBA/2J m 0.708 0.1941548115 1.0920043873 0.3239956127




  GWAS USING LINEAR MIXED MODELS