Project measure / variable:   Schoonjans1   liver_wt_CD

ID, description, units MPD:112855   liver_wt_CD   liver weight   [g]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure organ weights
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - liver weight CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means1.347   g
Median of the strain means1.3659   g
SD of the strain means± 0.18129
Coefficient of variation (CV)0.1346
Min–max range of strain means1.0349   –   1.8013   g
Mean sample size per strain4.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 4.8381 0.1382 4.2832 < 0.0001
Residuals 132 4.2599 0.0323


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 1.1279 0.05305   4 0.02652 0.047 1.0693, 1.1958 -1.21
BXD100 m 1.5753 0.12897   6 0.05265 0.0819 1.4278, 1.7475 1.26
BXD11 m 1.344 0.1794   4 0.0897 0.1335 1.1868, 1.5789 -0.02
BXD12 m 1.0349 0.08294   4 0.04147 0.0801 0.9136, 1.0945 -1.72
BXD27 m 1.3661 0.18368   4 0.09184 0.1345 1.2207, 1.6352 0.11
BXD32 m 1.2874 0.17422   5 0.07791 0.1353 1.1006, 1.526 -0.33
BXD34 m 1.2856 0.04561   5 0.0204 0.0355 1.2197, 1.3282 -0.34
BXD39 m 1.5304 0.22345   5 0.09993 0.146 1.2316, 1.86 1.01
BXD40 m 1.0984 0.10379   5 0.04642 0.0945 0.9954, 1.2318 -1.37
BXD43 m 1.0881 0.13696   3 0.07907 0.1259 0.9306, 1.1795 -1.43
BXD45 m 1.5539 0.0809   4 0.04045 0.0521 1.469, 1.6514 1.14
BXD48 m 1.2065 0.1898   5 0.08488 0.1573 0.9886, 1.498 -0.78
BXD48a m 1.5153 0.16588   4 0.08294 0.1095 1.3543, 1.7288 0.93
BXD49 m 1.8013 0.05079   3 0.02932 0.0282 1.7441, 1.8412 2.51
BXD51 m 1.5902 0.53232   5 0.23806 0.3347 1.2939, 2.5382 1.34
BXD53 m 1.3232 0.22186   5 0.09922 0.1677 0.9793, 1.5443 -0.13
BXD55 m 1.3802 0.12439   5 0.05563 0.0901 1.2193, 1.5378 0.18
BXD6 m 1.1819 0.10966   5 0.04904 0.0928 1.053, 1.3026 -0.91
BXD62 m 1.3997 0.23639   5 0.10572 0.1689 1.1507, 1.7768 0.29
BXD63 m 1.5426 0.10907   4 0.05453 0.0707 1.4635, 1.704 1.08
BXD64 m 1.1691 0.07931   3 0.04579 0.0678 1.0818, 1.2367 -0.98
BXD66 m 1.3622 0.1973   7 0.07457 0.1448 1.0752, 1.6518 0.08
BXD67 m 1.6405 0.12529   4 0.06264 0.0764 1.5251, 1.7738 1.62
BXD69 m 1.4009 0.28271   5 0.12643 0.2018 1.0578, 1.6718 0.3
BXD73 m 1.1718 0.10652   5 0.04764 0.0909 1.0408, 1.3258 -0.97
BXD75 m 1.4772 0.11673   5 0.0522 0.079 1.3148, 1.6338 0.72
BXD77 m 1.4028 0.06331   5 0.02831 0.0451 1.3174, 1.4717 0.31
BXD79 m 1.1473 0.26604   5 0.11898 0.2319 0.9067, 1.5571 -1.1
BXD8 m 1.1461 0.07286   5 0.03258 0.0636 1.0706, 1.2618 -1.11
BXD81 m 1.2274 0.2723   4 0.13615 0.2218 0.9706, 1.6087 -0.66
BXD84 m 1.3656 0.11353   5 0.05077 0.0831 1.2441, 1.5238 0.1
BXD87 m 1.0909 0.06096   5 0.02726 0.0559 1.0011, 1.1402 -1.41
BXD89 m 1.4633 0.151   5 0.06753 0.1032 1.2422, 1.6596 0.64
BXD90 m 1.3723 0.06864   5 0.0307 0.05 1.2559, 1.4261 0.14
C57BL/6J m 1.382 0.11432   5 0.05113 0.0827 1.2, 1.48 0.19
DBA/2J m 1.4399 0.16164   5 0.07229 0.1123 1.279, 1.6803 0.51


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 1.127875 0.0898224785 1.3055527406 0.9501972594
BXD100 m 1.5753333333 0.0733397466 1.7204066011 1.4302600656
BXD11 m 1.34405 0.0898224785 1.5217277406 1.1663722594
BXD12 m 1.034925 0.0898224785 1.2126027406 0.8572472594
BXD27 m 1.366075 0.0898224785 1.5437527406 1.1883972594
BXD32 m 1.28738 0.0803396671 1.4462998025 1.1284601975
BXD34 m 1.28556 0.0803396671 1.4444798025 1.1266401975
BXD39 m 1.53044 0.0803396671 1.6893598025 1.3715201975
BXD40 m 1.09836 0.0803396671 1.2572798025 0.9394401975
BXD43 m 1.0880666667 0.1037180642 1.2932312494 0.8829020839
BXD45 m 1.5539 0.0898224785 1.7315777406 1.3762222594
BXD48 m 1.20654 0.0803396671 1.3654598025 1.0476201975
BXD48a m 1.51535 0.0898224785 1.6930277406 1.3376722594
BXD49 m 1.8012666667 0.1037180642 2.0064312494 1.5961020839
BXD51 m 1.59022 0.0803396671 1.7491398025 1.4313001975
BXD53 m 1.32316 0.0803396671 1.4820798025 1.1642401975
BXD55 m 1.38016 0.0803396671 1.5390798025 1.2212401975
BXD6 m 1.18194 0.0803396671 1.3408598025 1.0230201975
BXD62 m 1.39974 0.0803396671 1.5586598025 1.2408201975
BXD63 m 1.542625 0.0898224785 1.7203027406 1.3649472594
BXD64 m 1.1691 0.1037180642 1.3742645828 0.9639354172
BXD66 m 1.3621571429 0.0678994115 1.4964688901 1.2278453956
BXD67 m 1.640475 0.0898224785 1.8181527406 1.4627972594
BXD69 m 1.40086 0.0803396671 1.5597798025 1.2419401975
BXD73 m 1.17182 0.0803396671 1.3307398025 1.0129001975
BXD75 m 1.47716 0.0803396671 1.6360798025 1.3182401975
BXD77 m 1.40276 0.0803396671 1.5616798025 1.2438401975
BXD79 m 1.14734 0.0803396671 1.3062598025 0.9884201975
BXD8 m 1.14612 0.0803396671 1.3050398025 0.9872001975
BXD81 m 1.227425 0.0898224785 1.4051027406 1.0497472594
BXD84 m 1.36556 0.0803396671 1.5244798025 1.2066401975
BXD87 m 1.09088 0.0803396671 1.2497998025 0.9319601975
BXD89 m 1.4633 0.0803396671 1.6222198025 1.3043801975
BXD90 m 1.3723 0.0803396671 1.5312198025 1.2133801975
C57BL/6J m 1.382 0.0803396671 1.5409198025 1.2230801975
DBA/2J m 1.43988 0.0803396671 1.5987998025 1.2809601975




  GWAS USING LINEAR MIXED MODELS