Project measure / variable:   Schoonjans1   IsoDCA_liver_CD

ID, description, units MPD:112831   IsoDCA_liver_CD   bile acid isodeoxycholic acid amount in liver, at 29 wks   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid isodeoxycholic acid amount in liver, at 29 wks CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.00332989   ng/mL
Median of the strain means0.00328832   ng/mL
SD of the strain means± 0.00176348
Coefficient of variation (CV)0.5296
Min–max range of strain means0.00092342   –   0.01187   ng/mL
Mean sample size per strain4.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 0.0004 0.0 0.363 0.9996
Residuals 134 0.0038 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.00447408 0.00567741   4 0.00283871 1.269 0.00118382, 0.01297 0.65
BXD100 m 0.00289358 0.00478992   6 0.00195548 1.6554 0.00089268, 0.01267 -0.25
BXD11 m 0.00131494 0.00029326   4 0.00014663 0.223 0.00107892, 0.00174 -1.14
BXD12 m 0.00510652 0.00754553   4 0.00377276 1.4776 0.00115499, 0.01642 1.01
BXD27 m 0.00202879 0.00150789   4 0.00075394 0.7432 0.00110668, 0.00427515 -0.74
BXD32 m 0.00344972 0.00506793   5 0.00226645 1.4691 0.00095745, 0.01251 0.07
BXD34 m 0.00342629 0.00510831   5 0.00228451 1.4909 0.00101493, 0.01256 0.05
BXD39 m 0.00349651 0.00521996   5 0.00233444 1.4929 0.00100199, 0.01283 0.09
BXD40 m 0.00334392 0.00498611   5 0.00222986 1.4911 0.00095495, 0.01226 0.01
BXD43 m 0.01187 0.01853   3 0.0107 1.5615 0.00103755, 0.03327 4.84
BXD45 m 0.00402934 0.00588134   4 0.00294067 1.4596 0.00096919, 0.01285 0.4
BXD48 m 0.00335475 0.00512528   5 0.00229209 1.5278 0.00092238, 0.01252 0.01
BXD48a m 0.00107381 0.00010177   4 5.088e-05 0.0948 0.00095333, 0.0011665 -1.28
BXD49 m 0.00102141 0.00019465   4 9.732e-05 0.1906 0.00078947, 0.00124625 -1.31
BXD51 m 0.00327136 0.00508182   5 0.00227266 1.5534 0.00084403, 0.01236 -0.03
BXD53 m 0.00331751 0.00522294   5 0.00233577 1.5744 0.00089109, 0.01266 -0.01
BXD55 m 0.00329413 0.0052482   5 0.00234706 1.5932 0.00082008, 0.01268 -0.02
BXD6 m 0.00365543 0.00500727   5 0.00223932 1.3698 0.00119166, 0.0126 0.18
BXD62 m 0.00327383 0.00519165   5 0.00232178 1.5858 0.00088775, 0.01256 -0.03
BXD63 m 0.00330049 0.00511043   5 0.00228545 1.5484 0.00084403, 0.01244 -0.02
BXD64 m 0.00488616 0.00666335   3 0.00384709 1.3637 0.00097729, 0.01258 0.88
BXD66 m 0.00260953 0.00429334   7 0.00162273 1.6453 0.00074242, 0.01234 -0.41
BXD67 m 0.00092342 0.00019287   4 9.644e-05 0.2089 0.00073062, 0.00118541 -1.36
BXD69 m 0.00329842 0.00511693   5 0.00228836 1.5513 0.00088855, 0.01245 -0.02
BXD73 m 0.00328252 0.00523885   5 0.00234288 1.596 0.00076347, 0.01265 -0.03
BXD75 m 0.0033082 0.00522241   5 0.00233553 1.5786 0.00093, 0.01265 -0.01
BXD77 m 0.00324006 0.00512726   5 0.00229298 1.5825 0.00083333, 0.01241 -0.05
BXD79 m 0.00333298 0.00529548   5 0.00236821 1.5888 0.0007043, 0.0128 0.0
BXD8 m 0.00368971 0.00502036   5 0.00224517 1.3606 0.00111386, 0.01264 0.2
BXD81 m 0.0009898 0.00011813   4 5.906e-05 0.1193 0.00084012, 0.00108955 -1.33
BXD84 m 0.00326521 0.00512471   5 0.00229184 1.5695 0.00079659, 0.01243 -0.04
BXD87 m 0.00318468 0.00505722   5 0.00226166 1.588 0.00078018, 0.01223 -0.08
BXD89 m 0.0032441 0.00516883   5 0.00231157 1.5933 0.00086567, 0.01249 -0.05
BXD90 m 0.00318713 0.00512253   5 0.00229086 1.6073 0.0008006, 0.01235 -0.08
C57BL/6J m 0.00322146 0.00518735   5 0.00231985 1.6102 0.00081653, 0.0125 -0.06
DBA/2J m 0.00321617 0.00515829   5 0.00230686 1.6039 0.00066465, 0.01244 -0.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.004474075 0.0026663207 0.0097475927 -0.0007994427
BXD100 m 0.0028935783 0.0021770417 0.0071993875 -0.0014122308
BXD11 m 0.0013149425 0.0026663207 0.0065884602 -0.0039585752
BXD12 m 0.0051065225 0.0026663207 0.0103800402 -0.0001669952
BXD27 m 0.0020287925 0.0026663207 0.0073023102 -0.0032447252
BXD32 m 0.003449718 0.0023848297 0.0081664956 -0.0012670596
BXD34 m 0.003426288 0.0023848297 0.0081430656 -0.0012904896
BXD39 m 0.00349651 0.0023848297 0.0082132876 -0.0012202676
BXD40 m 0.003343918 0.0023848297 0.0080606956 -0.0013728596
BXD43 m 0.0118692867 0.0030788019 0.0179586204 0.0057799529
BXD45 m 0.00402934 0.0026663207 0.0093028577 -0.0012441777
BXD48 m 0.003354748 0.0023848297 0.0080715256 -0.0013620296
BXD48a m 0.00107381 0.0026663207 0.0063473277 -0.0041997077
BXD49 m 0.001021415 0.0026663207 0.0062949327 -0.0042521027
BXD51 m 0.003271364 0.0023848297 0.0079881416 -0.0014454136
BXD53 m 0.003317506 0.0023848297 0.0080342836 -0.0013992716
BXD55 m 0.003294128 0.0023848297 0.0080109056 -0.0014226496
BXD6 m 0.00365543 0.0023848297 0.0083722076 -0.0010613476
BXD62 m 0.003273826 0.0023848297 0.0079906036 -0.0014429516
BXD63 m 0.003300486 0.0023848297 0.0080172636 -0.0014162916
BXD64 m 0.00488616 0.0030788019 0.0109754937 -0.0012031737
BXD66 m 0.0026095271 0.002015549 0.0065959318 -0.0013768775
BXD67 m 0.000923415 0.0026663207 0.0061969327 -0.0043501027
BXD69 m 0.003298422 0.0023848297 0.0080151996 -0.0014183556
BXD73 m 0.003282518 0.0023848297 0.0079992956 -0.0014342596
BXD75 m 0.003308204 0.0023848297 0.0080249816 -0.0014085736
BXD77 m 0.003240064 0.0023848297 0.0079568416 -0.0014767136
BXD79 m 0.003332982 0.0023848297 0.0080497596 -0.0013837956
BXD8 m 0.003689714 0.0023848297 0.0084064916 -0.0010270636
BXD81 m 0.0009897975 0.0026663207 0.0062633152 -0.0042837202
BXD84 m 0.00326521 0.0023848297 0.0079819876 -0.0014515676
BXD87 m 0.00318468 0.0023848297 0.0079014576 -0.0015320976
BXD89 m 0.003244096 0.0023848297 0.0079608736 -0.0014726816
BXD90 m 0.003187134 0.0023848297 0.0079039116 -0.0015296436
C57BL/6J m 0.00322146 0.0023848297 0.0079382376 -0.0014953176
DBA/2J m 0.003216168 0.0023848297 0.0079329456 -0.0015006096




  GWAS USING LINEAR MIXED MODELS