Project measure / variable:   Schoonjans1   DCA_liver_HFD

ID, description, units MPD:112821   DCA_liver_HFD   bile acid deoxycholic acid amount in liver, at 29 wks   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure biomarker quantification
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Schoonjans1 - bile acid deoxycholic acid amount in liver, at 29 wks HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.01287   ng/mL
Median of the strain means0.01108   ng/mL
SD of the strain means± 0.00595306
Coefficient of variation (CV)0.4626
Min–max range of strain means0.00991735   –   0.04421   ng/mL
Mean sample size per strain4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 0.0042 0.0001 2.3107 0.0003
Residuals 141 0.0074 0.0001


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.01799 0.00146405   5 0.00065474 0.0814 0.01623, 0.01967 0.86
BXD100 m 0.01037 0.00111667   7 0.00042206 0.1076 0.00893491, 0.01167 -0.42
BXD11 m 0.04421 0.05292   3 0.03056 1.1971 0.01265, 0.10531 5.26
BXD12 m 0.01313 0.00131339   4 0.0006567 0.1 0.01193, 0.01478 0.04
BXD27 m 0.01222 0.00148533   5 0.00066426 0.1215 0.01032, 0.01448 -0.11
BXD32 m 0.01478 0.00311004   4 0.00155502 0.2104 0.01014, 0.01675 0.32
BXD34 m 0.01229 0.00276861   4 0.00138431 0.2253 0.0107, 0.01643 -0.1
BXD39 m 0.01398 0.00476236   5 0.00212979 0.3407 0.01088, 0.02239 0.19
BXD40 m 0.01062 0.00061219   5 0.00027378 0.0577 0.00987769, 0.01134 -0.38
BXD43 m 0.01111 0.00125692   5 0.00056211 0.1131 0.00969026, 0.01306 -0.3
BXD45 m 0.01191 0.00131962   5 0.00059015 0.1108 0.01045, 0.01355 -0.16
BXD48 m 0.0124 0.0017591   5 0.00078669 0.1419 0.01044, 0.01435 -0.08
BXD48a m 0.0104 0.00083341   5 0.00037271 0.0801 0.00967262, 0.01179 -0.41
BXD49 m 0.0233 0.01866   5 0.00834343 0.8007 0.0125, 0.05641 1.75
BXD51 m 0.01108 0.00068589   5 0.00030674 0.0619 0.01039, 0.01221 -0.3
BXD53 m 0.01055 0.00083422   5 0.00037307 0.0791 0.00921, 0.01137 -0.39
BXD55 m 0.01084 0.0006486   5 0.00029006 0.0598 0.00999015, 0.01155 -0.34
BXD6 m 0.01396 0.00262686   5 0.00117477 0.1882 0.01191, 0.01846 0.18
BXD62 m 0.01035 0.00058308   5 0.00026076 0.0563 0.00952642, 0.01092 -0.42
BXD63 m 0.01104 0.00113396   5 0.00050712 0.1027 0.01008, 0.01297 -0.31
BXD64 m 0.01094 0.00156488   5 0.00069983 0.143 0.00922849, 0.01342 -0.32
BXD66 m 0.01037 0.00077574   9 0.00025858 0.0748 0.0094768, 0.0118 -0.42
BXD67 m 0.01038 0.00071487   5 0.0003197 0.0689 0.00929429, 0.01122 -0.42
BXD69 m 0.01118 0.00142524   5 0.00063739 0.1275 0.00956845, 0.01333 -0.28
BXD73 m 0.01072 0.00068524   5 0.00030645 0.0639 0.00975149, 0.01127 -0.36
BXD75 m 0.01254 0.00350581   4 0.0017529 0.2796 0.01001, 0.01752 -0.06
BXD77 m 0.0112 0.00131924   5 0.00058998 0.1178 0.00971037, 0.01297 -0.28
BXD79 m 0.01025 0.00068935   5 0.00030829 0.0673 0.00932353, 0.01115 -0.44
BXD8 m 0.014 0.00200327   4 0.00100164 0.1431 0.01218, 0.01684 0.19
BXD81 m 0.01272 0.00218496   5 0.00097714 0.1717 0.01085, 0.01548 -0.02
BXD84 m 0.00991735 0.00062883   5 0.00028122 0.0634 0.00923419, 0.01067 -0.5
BXD87 m 0.01072 0.00105041   5 0.00046976 0.098 0.01001, 0.01256 -0.36
BXD89 m 0.0102 0.00064115   5 0.00028673 0.0629 0.00913174, 0.01078 -0.45
BXD90 m 0.00996657 0.00100801   3 0.00058198 0.1011 0.00935452, 0.01113 -0.49
C57BL/6J m 0.01054 0.00077194   5 0.00034522 0.0732 0.00956175, 0.01131 -0.39
DBA/2J m 0.01109 0.00130882   5 0.00058532 0.1181 0.00991525, 0.01307 -0.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.01799 0.0032309955 0.0243774568 0.0116025432
BXD100 m 0.0103737571 0.0027306896 0.0157721434 0.0049753708
BXD11 m 0.04421 0.0041711973 0.0524561713 0.0359638287
BXD12 m 0.01313 0.0036123628 0.0202713938 0.0059886062
BXD27 m 0.012222 0.0032309955 0.0186094568 0.0058345432
BXD32 m 0.01478 0.0036123628 0.0219213938 0.0076386062
BXD34 m 0.0122875 0.0036123628 0.0194288938 0.0051461062
BXD39 m 0.013978 0.0032309955 0.0203654568 0.0075905432
BXD40 m 0.010615538 0.0032309955 0.0170029948 0.0042280812
BXD43 m 0.011114052 0.0032309955 0.0175015088 0.0047265952
BXD45 m 0.01191 0.0032309955 0.0182974568 0.0055225432
BXD48 m 0.012398 0.0032309955 0.0187854568 0.0060105432
BXD48a m 0.010401368 0.0032309955 0.0167888248 0.0040139112
BXD49 m 0.0233 0.0032309955 0.0296874568 0.0169125432
BXD51 m 0.01108 0.0032309955 0.0174674568 0.0046925432
BXD53 m 0.010552 0.0032309955 0.0169394568 0.0041645432
BXD55 m 0.01084003 0.0032309955 0.0172274868 0.0044525732
BXD6 m 0.013958 0.0032309955 0.0203454568 0.0075705432
BXD62 m 0.010348358 0.0032309955 0.0167358148 0.0039609012
BXD63 m 0.011038 0.0032309955 0.0174254568 0.0046505432
BXD64 m 0.010939698 0.0032309955 0.0173271548 0.0045522412
BXD66 m 0.0103673433 0.0024082419 0.0151282725 0.0056064141
BXD67 m 0.010378858 0.0032309955 0.0167663148 0.0039914012
BXD69 m 0.01117769 0.0032309955 0.0175651468 0.0047902332
BXD73 m 0.010718298 0.0032309955 0.0171057548 0.0043308412
BXD75 m 0.0125375 0.0036123628 0.0196788938 0.0053961062
BXD77 m 0.011202074 0.0032309955 0.0175895308 0.0048146172
BXD79 m 0.010249166 0.0032309955 0.0166366228 0.0038617092
BXD8 m 0.0140025 0.0036123628 0.0211438938 0.0068611062
BXD81 m 0.012724 0.0032309955 0.0191114568 0.0063365432
BXD84 m 0.00991735 0.0032309955 0.0163048068 0.0035298932
BXD87 m 0.010718 0.0032309955 0.0171054568 0.0043305432
BXD89 m 0.010200348 0.0032309955 0.0165878048 0.0038128912
BXD90 m 0.0099665733 0.0041711973 0.0182127446 0.0017204021
C57BL/6J m 0.010544398 0.0032309955 0.0169318548 0.0041569412
DBA/2J m 0.01108505 0.0032309955 0.0174725068 0.0046975932




  GWAS USING LINEAR MIXED MODELS