Project measure / variable:   Schoonjans1   DCA_liver_CD

ID, description, units MPD:112820   DCA_liver_CD   bile acid deoxycholic acid amount in liver, at 29 wks   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid deoxycholic acid amount in liver, at 29 wks CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.01579   ng/mL
Median of the strain means0.01155   ng/mL
SD of the strain means± 0.01827
Coefficient of variation (CV)1.1571
Min–max range of strain means0.01007   –   0.11587   ng/mL
Mean sample size per strain4.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 0.037 0.0011 1.7642 0.0116
Residuals 134 0.0802 0.0006


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.01569 0.00271046   4 0.00135523 0.1728 0.01316, 0.01931 -0.01
BXD100 m 0.01031 0.00091155   6 0.00037214 0.0884 0.00922843, 0.0117 -0.3
BXD11 m 0.01292 0.00210037   4 0.00105019 0.1626 0.01112, 0.01575 -0.16
BXD12 m 0.04791 0.06969   4 0.03485 1.4548 0.01155, 0.15242 1.76
BXD27 m 0.02026 0.0149   4 0.00744907 0.7353 0.01155, 0.04251 0.24
BXD32 m 0.01363 0.00242631   5 0.00108508 0.1781 0.01106, 0.01746 -0.12
BXD34 m 0.01225 0.00168791   5 0.00075486 0.1378 0.01079, 0.0142 -0.19
BXD39 m 0.01219 0.00185353   5 0.00082892 0.152 0.01062, 0.01518 -0.2
BXD40 m 0.01227 0.00173938   5 0.00077787 0.1418 0.0102, 0.01408 -0.19
BXD43 m 0.11587 0.17988   3 0.10385 1.5525 0.01078, 0.32357 5.48
BXD45 m 0.01194 0.00228684   4 0.00114342 0.1915 0.01006, 0.01527 -0.21
BXD48 m 0.01252 0.00186316   5 0.00083323 0.1488 0.01111, 0.01563 -0.18
BXD48a m 0.01085 0.0009355   4 0.00046775 0.0862 0.01008, 0.01211 -0.27
BXD49 m 0.01093 0.00091098   4 0.00045549 0.0834 0.01019, 0.01216 -0.27
BXD51 m 0.01117 0.00136153   5 0.00060889 0.1219 0.00977295, 0.01289 -0.25
BXD53 m 0.01039 0.00077994   5 0.0003488 0.0751 0.00935834, 0.01154 -0.3
BXD55 m 0.01157 0.00087799   5 0.00039265 0.0759 0.01066, 0.01273 -0.23
BXD6 m 0.01313 0.00216862   5 0.00096984 0.1652 0.01052, 0.01614 -0.15
BXD62 m 0.01079 0.00083884   5 0.00037514 0.0778 0.00951256, 0.01146 -0.27
BXD63 m 0.0123 0.00228097   5 0.00102008 0.1855 0.00950642, 0.01581 -0.19
BXD64 m 0.01033 0.00144139   3 0.00083218 0.1395 0.00931294, 0.01198 -0.3
BXD66 m 0.01071 0.00068134   7 0.00025752 0.0636 0.01016, 0.01215 -0.28
BXD67 m 0.01103 0.00088267   4 0.00044133 0.0801 0.01002, 0.01213 -0.26
BXD69 m 0.0105 0.0009799   5 0.00043823 0.0933 0.00959337, 0.01196 -0.29
BXD73 m 0.01162 0.00134341   5 0.00060079 0.1156 0.01013, 0.01366 -0.23
BXD75 m 0.01159 0.001333   5 0.00059614 0.115 0.01008, 0.01338 -0.23
BXD77 m 0.01028 0.00117522   5 0.00052558 0.1143 0.00895833, 0.01218 -0.3
BXD79 m 0.01134 0.00129153   5 0.00057759 0.1139 0.00953047, 0.01316 -0.24
BXD8 m 0.01451 0.00252435   5 0.00112892 0.174 0.0125, 0.01757 -0.07
BXD81 m 0.01125 0.00144792   4 0.00072396 0.1287 0.00934158, 0.01278 -0.25
BXD84 m 0.01153 0.00080784   5 0.00036128 0.0701 0.01073, 0.01267 -0.23
BXD87 m 0.01227 0.00143107   5 0.00064 0.1167 0.01074, 0.0145 -0.19
BXD89 m 0.0112 0.00172422   5 0.0007711 0.154 0.00948155, 0.01401 -0.25
BXD90 m 0.01007 0.00036306   5 0.00016236 0.0361 0.00970854, 0.01059 -0.31
C57BL/6J m 0.01116 0.00094166   5 0.00042112 0.0844 0.01004, 0.01202 -0.25
DBA/2J m 0.01022 0.00040272   5 0.0001801 0.0394 0.00971976, 0.01078 -0.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.01569 0.0122352382 0.0398891693 -0.0085091693
BXD100 m 0.0103106333 0.0099900302 0.0300691723 -0.0094479056
BXD11 m 0.0129175 0.0122352382 0.0371166693 -0.0112816693
BXD12 m 0.047905 0.0122352382 0.0721041693 0.0237058307
BXD27 m 0.0202625 0.0122352382 0.0444616693 -0.0039366693
BXD32 m 0.013626 0.0109435297 0.035270395 -0.008018395
BXD34 m 0.01225 0.0109435297 0.033894395 -0.009394395
BXD39 m 0.012192 0.0109435297 0.033836395 -0.009452395
BXD40 m 0.012266 0.0109435297 0.033910395 -0.009378395
BXD43 m 0.1158666667 0.0141280361 0.1438094604 0.0879238729
BXD45 m 0.0119425 0.0122352382 0.0361416693 -0.0122566693
BXD48 m 0.012518 0.0109435297 0.034162395 -0.009126395
BXD48a m 0.0108475 0.0122352382 0.0350466693 -0.0133516693
BXD49 m 0.0109275 0.0122352382 0.0351266693 -0.0132716693
BXD51 m 0.01117259 0.0109435297 0.032816985 -0.010471805
BXD53 m 0.010389668 0.0109435297 0.032034063 -0.011254727
BXD55 m 0.011572 0.0109435297 0.033216395 -0.010072395
BXD6 m 0.013126 0.0109435297 0.034770395 -0.008518395
BXD62 m 0.010786512 0.0109435297 0.032430907 -0.010857883
BXD63 m 0.012299284 0.0109435297 0.033943679 -0.009345111
BXD64 m 0.0103306167 0.0141280361 0.0382734104 -0.0176121771
BXD66 m 0.0107057143 0.0092489707 0.0289985668 -0.0075871382
BXD67 m 0.011025 0.0122352382 0.0352241693 -0.0131741693
BXD69 m 0.010501766 0.0109435297 0.032146161 -0.011142629
BXD73 m 0.01162 0.0109435297 0.033264395 -0.010024395
BXD75 m 0.01159 0.0109435297 0.033234395 -0.010054395
BXD77 m 0.010278832 0.0109435297 0.031923227 -0.011365563
BXD79 m 0.011342094 0.0109435297 0.032986489 -0.010302301
BXD8 m 0.01451 0.0109435297 0.036154395 -0.007134395
BXD81 m 0.011247895 0.0122352382 0.0354470643 -0.0129512743
BXD84 m 0.01153 0.0109435297 0.033174395 -0.010114395
BXD87 m 0.012268 0.0109435297 0.033912395 -0.009376395
BXD89 m 0.01119831 0.0109435297 0.032842705 -0.010446085
BXD90 m 0.010068182 0.0109435297 0.031712577 -0.011576213
C57BL/6J m 0.011156 0.0109435297 0.032800395 -0.010488395
DBA/2J m 0.010221952 0.0109435297 0.031866347 -0.011422443




  GWAS USING LINEAR MIXED MODELS