Project measure / variable:   Schoonjans1   CDCA_liver_HFD

ID, description, units MPD:112819   CDCA_liver_HFD   bile acid chenodeoxycholic acid amount in liver, at 29 wks   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid chenodeoxycholic acid amount in liver, at 29 wks HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.01308   ng/mL
Median of the strain means0.01258   ng/mL
SD of the strain means± 0.00193491
Coefficient of variation (CV)0.148
Min–max range of strain means0.01099   –   0.02048   ng/mL
Mean sample size per strain4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 0.0005 0.0 1.7803 0.01
Residuals 141 0.0012 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.01451 0.00134931   5 0.00060343 0.093 0.01319, 0.01677 0.74
BXD100 m 0.01265 0.00167826   7 0.00063432 0.1327 0.01068, 0.01566 -0.22
BXD11 m 0.02048 0.01443   3 0.00833202 0.7045 0.01014, 0.03697 3.83
BXD12 m 0.01251 0.00080591   4 0.00040296 0.0644 0.0115, 0.01347 -0.29
BXD27 m 0.01329 0.00088785   5 0.00039706 0.0668 0.01231, 0.01468 0.11
BXD32 m 0.01849 0.00649476   4 0.00324738 0.3512 0.01245, 0.02615 2.8
BXD34 m 0.01236 0.00147504   4 0.00073752 0.1193 0.01052, 0.01402 -0.37
BXD39 m 0.01515 0.00714157   5 0.00319381 0.4714 0.01029, 0.02779 1.07
BXD40 m 0.01312 0.0010126   5 0.00045285 0.0772 0.01168, 0.01443 0.02
BXD43 m 0.01209 0.00096051   5 0.00042955 0.0795 0.01088, 0.01323 -0.51
BXD45 m 0.01389 0.0020004   5 0.00089461 0.144 0.01169, 0.01597 0.42
BXD48 m 0.01266 0.0017787   5 0.00079546 0.1405 0.01117, 0.01562 -0.21
BXD48a m 0.01215 0.00119247   5 0.00053329 0.0981 0.01088, 0.01362 -0.48
BXD49 m 0.01698 0.0074169   5 0.00331694 0.4369 0.01195, 0.02985 2.02
BXD51 m 0.0124 0.00084568   5 0.0003782 0.0682 0.01121, 0.01341 -0.35
BXD53 m 0.0117 0.00059555   5 0.00026634 0.0509 0.01088, 0.01242 -0.71
BXD55 m 0.01266 0.00192353   5 0.00086023 0.1519 0.01103, 0.0148 -0.21
BXD6 m 0.0134 0.00102253   5 0.00045729 0.0763 0.0125, 0.01515 0.17
BXD62 m 0.01256 0.00149732   5 0.00066962 0.1192 0.01068, 0.01454 -0.27
BXD63 m 0.01176 0.00085309   5 0.00038152 0.0726 0.01041, 0.01263 -0.68
BXD64 m 0.01314 0.00078163   5 0.00034956 0.0595 0.01235, 0.01428 0.03
BXD66 m 0.01194 0.00100949   9 0.0003365 0.0845 0.01047, 0.01389 -0.59
BXD67 m 0.01147 0.00079745   5 0.00035663 0.0695 0.01068, 0.01238 -0.83
BXD69 m 0.01297 0.00205811   5 0.00092042 0.1586 0.01128, 0.01651 -0.05
BXD73 m 0.01261 0.00175347   5 0.00078418 0.1391 0.01042, 0.01477 -0.24
BXD75 m 0.01242 0.00132303   4 0.00066151 0.1065 0.01098, 0.01414 -0.34
BXD77 m 0.0127 0.00172136   5 0.00076982 0.1355 0.01107, 0.01554 -0.19
BXD79 m 0.01279 0.00074925   5 0.00033507 0.0586 0.01191, 0.0134 -0.15
BXD8 m 0.01304 0.00092134   4 0.00046067 0.0707 0.01211, 0.01426 -0.02
BXD81 m 0.01249 0.00038652   5 0.00017286 0.0309 0.01207, 0.01295 -0.3
BXD84 m 0.01164 0.0003496   5 0.00015635 0.03 0.01117, 0.01198 -0.74
BXD87 m 0.01208 0.00116655   5 0.0005217 0.0965 0.0104, 0.0132 -0.51
BXD89 m 0.01218 0.00117808   5 0.00052685 0.0967 0.01087, 0.01356 -0.46
BXD90 m 0.01163 0.00098423   3 0.00056824 0.0846 0.01096, 0.01276 -0.75
C57BL/6J m 0.01183 0.00081773   5 0.0003657 0.0691 0.01064, 0.01287 -0.64
DBA/2J m 0.01099 0.00069006   5 0.0003086 0.0628 0.01008, 0.01188 -1.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.01451 0.0012844399 0.0170492498 0.0119707502
BXD100 m 0.0126471429 0.0010855499 0.0147932006 0.0105010851
BXD11 m 0.0204833333 0.0016582048 0.0237614907 0.017205176
BXD12 m 0.0125125 0.0014360475 0.0153514675 0.0096735325
BXD27 m 0.013288 0.0012844399 0.0158272498 0.0107487502
BXD32 m 0.018495 0.0014360475 0.0213339675 0.0156560325
BXD34 m 0.01236 0.0014360475 0.0151989675 0.0095210325
BXD39 m 0.01515 0.0012844399 0.0176892498 0.0126107502
BXD40 m 0.01312 0.0012844399 0.0156592498 0.0105807502
BXD43 m 0.012088 0.0012844399 0.0146272498 0.0095487502
BXD45 m 0.013888 0.0012844399 0.0164272498 0.0113487502
BXD48 m 0.012658 0.0012844399 0.0151972498 0.0101187502
BXD48a m 0.012154 0.0012844399 0.0146932498 0.0096147502
BXD49 m 0.016976 0.0012844399 0.0195152498 0.0144367502
BXD51 m 0.012398 0.0012844399 0.0149372498 0.0098587502
BXD53 m 0.011704 0.0012844399 0.0142432498 0.0091647502
BXD55 m 0.012664 0.0012844399 0.0152032498 0.0101247502
BXD6 m 0.013398 0.0012844399 0.0159372498 0.0108587502
BXD62 m 0.012558 0.0012844399 0.0150972498 0.0100187502
BXD63 m 0.011758 0.0012844399 0.0142972498 0.0092187502
BXD64 m 0.01314 0.0012844399 0.0156792498 0.0106007502
BXD66 m 0.0119422222 0.000957365 0.0138348672 0.0100495772
BXD67 m 0.011466 0.0012844399 0.0140052498 0.0089267502
BXD69 m 0.012974 0.0012844399 0.0155132498 0.0104347502
BXD73 m 0.012608 0.0012844399 0.0151472498 0.0100687502
BXD75 m 0.01242 0.0014360475 0.0152589675 0.0095810325
BXD77 m 0.012704 0.0012844399 0.0152432498 0.0101647502
BXD79 m 0.012792 0.0012844399 0.0153312498 0.0102527502
BXD8 m 0.01304 0.0014360475 0.0158789675 0.0102010325
BXD81 m 0.01249 0.0012844399 0.0150292498 0.0099507502
BXD84 m 0.011642 0.0012844399 0.0141812498 0.0091027502
BXD87 m 0.012084 0.0012844399 0.0146232498 0.0095447502
BXD89 m 0.012182 0.0012844399 0.0147212498 0.0096427502
BXD90 m 0.01163 0.0016582048 0.0149081573 0.0083518427
C57BL/6J m 0.011834 0.0012844399 0.0143732498 0.0092947502
DBA/2J m 0.010986 0.0012844399 0.0135252498 0.0084467502




  GWAS USING LINEAR MIXED MODELS