Project measure / variable:   Schoonjans1   CDCA_liver_CD

ID, description, units MPD:112818   CDCA_liver_CD   bile acid chenodeoxycholic acid amount in liver, at 29 wks   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid chenodeoxycholic acid amount in liver, at 29 wks CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.01328   ng/mL
Median of the strain means0.01223   ng/mL
SD of the strain means± 0.0046629
Coefficient of variation (CV)0.3511
Min–max range of strain means0.01096   –   0.03824   ng/mL
Mean sample size per strain4.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 0.0025 0.0001 1.7055 0.0165
Residuals 134 0.0055 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.01538 0.00360628   4 0.00180314 0.2345 0.01301, 0.02073 0.45
BXD100 m 0.01096 0.00099577   6 0.00040652 0.0909 0.00932195, 0.01205 -0.5
BXD11 m 0.01196 0.00114033   4 0.00057017 0.0954 0.01052, 0.01331 -0.28
BXD12 m 0.02202 0.01808   4 0.00904227 0.8213 0.01223, 0.04912 1.87
BXD27 m 0.01489 0.0059309   4 0.00296545 0.3984 0.01146, 0.02377 0.34
BXD32 m 0.01291 0.0010659   5 0.00047669 0.0826 0.01193, 0.01442 -0.08
BXD34 m 0.01223 0.00085832   5 0.00038385 0.0702 0.01155, 0.01321 -0.23
BXD39 m 0.01249 0.00049333   5 0.00022062 0.0395 0.01216, 0.01336 -0.17
BXD40 m 0.01262 0.00253281   5 0.00113271 0.2007 0.01068, 0.01676 -0.14
BXD43 m 0.03824 0.04602   3 0.02657 1.2035 0.01106, 0.09137 5.35
BXD45 m 0.01243 0.00088487   4 0.00044244 0.0712 0.01142, 0.0134 -0.18
BXD48 m 0.01266 0.00080515   5 0.00036007 0.0636 0.01179, 0.01377 -0.13
BXD48a m 0.01149 0.00087464   4 0.00043732 0.0761 0.01025, 0.01218 -0.38
BXD49 m 0.01207 0.0007567   4 0.00037835 0.0627 0.01104, 0.0127 -0.26
BXD51 m 0.01223 0.00113159   5 0.00050606 0.0925 0.01084, 0.01378 -0.23
BXD53 m 0.01186 0.00124225   5 0.00055555 0.1047 0.01085, 0.01347 -0.31
BXD55 m 0.01164 0.001636   5 0.00073164 0.1405 0.00975149, 0.01403 -0.35
BXD6 m 0.01357 0.00091037   5 0.00040713 0.0671 0.01261, 0.01499 0.06
BXD62 m 0.01132 0.00064493   5 0.00028842 0.057 0.01066, 0.01218 -0.42
BXD63 m 0.01109 0.00029441   5 0.00013167 0.0266 0.01074, 0.01142 -0.47
BXD64 m 0.0127 0.00064501   3 0.00037239 0.0508 0.01196, 0.01316 -0.12
BXD66 m 0.0125 0.00099669   7 0.00037671 0.0797 0.01117, 0.01446 -0.17
BXD67 m 0.01241 0.00151595   4 0.00075797 0.1221 0.01074, 0.01436 -0.19
BXD69 m 0.01192 0.00054131   5 0.00024208 0.0454 0.0112, 0.01262 -0.29
BXD73 m 0.01183 0.00079122   5 0.00035384 0.0669 0.01097, 0.01298 -0.31
BXD75 m 0.01189 0.00060036   5 0.00026849 0.0505 0.01142, 0.01266 -0.3
BXD77 m 0.01198 0.00188883   5 0.00084471 0.1577 0.01086, 0.01528 -0.28
BXD79 m 0.01224 0.00112665   5 0.00050385 0.0921 0.0107, 0.01326 -0.22
BXD8 m 0.01315 0.00090791   5 0.00040603 0.069 0.01239, 0.01454 -0.03
BXD81 m 0.01129 0.00034903   4 0.00017452 0.0309 0.01098, 0.01179 -0.43
BXD84 m 0.01256 0.0011262   5 0.00050365 0.0896 0.01138, 0.01392 -0.15
BXD87 m 0.01176 0.00078034   5 0.00034898 0.0664 0.01095, 0.013 -0.33
BXD89 m 0.01254 0.00077771   5 0.0003478 0.062 0.01154, 0.01363 -0.16
BXD90 m 0.01163 0.00109347   5 0.00048902 0.0941 0.00994083, 0.01244 -0.35
C57BL/6J m 0.01229 0.00076828   5 0.00034358 0.0625 0.01104, 0.01298 -0.21
DBA/2J m 0.01142 0.00062972   5 0.00028162 0.0551 0.01093, 0.01252 -0.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.01538 0.0032035734 0.0217161101 0.0090438899
BXD100 m 0.0109569917 0.0026157068 0.0161304039 0.0057835794
BXD11 m 0.0119575 0.0032035734 0.0182936101 0.0056213899
BXD12 m 0.02202 0.0032035734 0.0283561101 0.0156838899
BXD27 m 0.0148875 0.0032035734 0.0212236101 0.0085513899
BXD32 m 0.01291 0.0028653632 0.0185771891 0.0072428109
BXD34 m 0.012232 0.0028653632 0.0178991891 0.0065648109
BXD39 m 0.012492 0.0028653632 0.0181591891 0.0068248109
BXD40 m 0.012618 0.0028653632 0.0182851891 0.0069508109
BXD43 m 0.0382366667 0.003699168 0.0455529764 0.0309203569
BXD45 m 0.01243 0.0032035734 0.0187661101 0.0060938899
BXD48 m 0.012662 0.0028653632 0.0183291891 0.0069948109
BXD48a m 0.01149 0.0032035734 0.0178261101 0.0051538899
BXD49 m 0.01207 0.0032035734 0.0184061101 0.0057338899
BXD51 m 0.01223 0.0028653632 0.0178971891 0.0065628109
BXD53 m 0.011864 0.0028653632 0.0175311891 0.0061968109
BXD55 m 0.011642298 0.0028653632 0.0173094871 0.0059751089
BXD6 m 0.013572 0.0028653632 0.0192391891 0.0079048109
BXD62 m 0.011316 0.0028653632 0.0169831891 0.0056488109
BXD63 m 0.011086 0.0028653632 0.0167531891 0.0054188109
BXD64 m 0.0126966667 0.003699168 0.0200129764 0.0053803569
BXD66 m 0.0125042857 0.0024216739 0.0172939347 0.0077146367
BXD67 m 0.0124125 0.0032035734 0.0187486101 0.0060763899
BXD69 m 0.011922 0.0028653632 0.0175891891 0.0062548109
BXD73 m 0.011834 0.0028653632 0.0175011891 0.0061668109
BXD75 m 0.011894 0.0028653632 0.0175611891 0.0062268109
BXD77 m 0.011976 0.0028653632 0.0176431891 0.0063088109
BXD79 m 0.012236 0.0028653632 0.0179031891 0.0065688109
BXD8 m 0.01315 0.0028653632 0.0188171891 0.0074828109
BXD81 m 0.0112925 0.0032035734 0.0176286101 0.0049563899
BXD84 m 0.012564 0.0028653632 0.0182311891 0.0068968109
BXD87 m 0.011756 0.0028653632 0.0174231891 0.0060888109
BXD89 m 0.012536 0.0028653632 0.0182031891 0.0068688109
BXD90 m 0.011626166 0.0028653632 0.0172933551 0.0059589769
C57BL/6J m 0.01229 0.0028653632 0.0179571891 0.0066228109
DBA/2J m 0.01142 0.0028653632 0.0170871891 0.0057528109




  GWAS USING LINEAR MIXED MODELS