Project measure / variable:   Schoonjans1   CA_liver_HFD

ID, description, units MPD:112817   CA_liver_HFD   bile acid cholic acid amount in liver, at 29 wks   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid cholic acid amount in liver, at 29 wks HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.06171   ng/mL
Median of the strain means0.02094   ng/mL
SD of the strain means± 0.1382
Coefficient of variation (CV)2.2394
Min–max range of strain means0.00640842   –   0.78471   ng/mL
Mean sample size per strain4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 3.2562 0.093 2.0589 0.0017
Residuals 141 6.3712 0.0452


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.08519 0.05609   5 0.02509 0.6584 0.04755, 0.18283 0.17
BXD100 m 0.01231 0.00678204   7 0.00256337 0.5508 0.00726096, 0.02502 -0.36
BXD11 m 0.09801 0.15889   3 0.09173 1.6211 0.00562133, 0.28148 0.26
BXD12 m 0.08338 0.10075   4 0.05038 1.2084 0.00686391, 0.22991 0.16
BXD27 m 0.01589 0.01209   5 0.00540806 0.761 0.00789474, 0.03662 -0.33
BXD32 m 0.35939 0.37233   4 0.18616 1.036 0.05256, 0.84219 2.15
BXD34 m 0.07572 0.04819   4 0.02409 0.6364 0.01738, 0.12842 0.1
BXD39 m 0.02322 0.0262   5 0.01172 1.1282 0.00784729, 0.06891 -0.28
BXD40 m 0.00893079 0.00135755   5 0.00060711 0.152 0.00692651, 0.01004 -0.38
BXD43 m 0.00787972 0.00167838   5 0.00075059 0.213 0.00616519, 0.01041 -0.39
BXD45 m 0.09816 0.03635   5 0.01626 0.3704 0.04503, 0.13306 0.26
BXD48 m 0.03034 0.03279   5 0.01466 1.0808 0.00532454, 0.076 -0.23
BXD48a m 0.01845 0.01531   5 0.00684891 0.8299 0.00625628, 0.0437 -0.31
BXD49 m 0.78471 1.2021   5 0.5376 1.5319 0.01992, 2.8921 5.23
BXD51 m 0.00827704 0.00104212   5 0.00046605 0.1259 0.00660891, 0.00910661 -0.39
BXD53 m 0.00640842 0.00122158   5 0.00054631 0.1906 0.005205, 0.00822439 -0.4
BXD55 m 0.05033 0.05046   5 0.02257 1.0026 0.00687192, 0.12963 -0.08
BXD6 m 0.07063 0.05189   5 0.02321 0.7347 0.0297, 0.15864 0.06
BXD62 m 0.01412 0.01249   5 0.00558474 0.8844 0.00585075, 0.03571 -0.34
BXD63 m 0.00784226 0.00195322   5 0.00087351 0.2491 0.00575322, 0.00996024 -0.39
BXD64 m 0.02008 0.0107   5 0.00478441 0.5327 0.00749258, 0.03158 -0.3
BXD66 m 0.00797441 0.00237451   9 0.0007915 0.2978 0.00482725, 0.01222 -0.39
BXD67 m 0.0218 0.01389   5 0.00621205 0.6372 0.00971916, 0.04249 -0.29
BXD69 m 0.02473 0.03081   5 0.01378 1.2459 0.00464641, 0.07827 -0.27
BXD73 m 0.0625 0.04621   5 0.02067 0.7394 0.01597, 0.13404 0.01
BXD75 m 0.03258 0.04151   4 0.02075 1.2738 0.00642, 0.09398 -0.21
BXD77 m 0.03819 0.0595   5 0.02661 1.558 0.00762195, 0.14445 -0.17
BXD79 m 0.01556 0.01432   5 0.0064052 0.9207 0.00577941, 0.03969 -0.33
BXD8 m 0.01453 0.00539555   4 0.00269777 0.3713 0.00908132, 0.02129 -0.34
BXD81 m 0.01775 0.0207   5 0.00925923 1.1664 0.00482518, 0.05316 -0.32
BXD84 m 0.01251 0.0054383   5 0.00243208 0.4347 0.00575529, 0.01775 -0.36
BXD87 m 0.02961 0.01592   5 0.00712094 0.5378 0.01014, 0.04798 -0.23
BXD89 m 0.03066 0.02142   5 0.00957795 0.6985 0.00901198, 0.065 -0.22
BXD90 m 0.00775118 0.00334218   3 0.00192961 0.4312 0.00460526, 0.01126 -0.39
C57BL/6J m 0.01895 0.00694958   5 0.00310795 0.3667 0.01132, 0.026 -0.31
DBA/2J m 0.0072735 0.00277004   5 0.0012388 0.3808 0.00499502, 0.01204 -0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.085192 0.0950641643 0.2731273398 -0.1027433398
BXD100 m 0.0123129157 0.0803438829 0.1711472678 -0.1465214364
BXD11 m 0.0980116233 0.1227273084 0.3406351038 -0.1446118571
BXD12 m 0.0833784775 0.1062849668 0.2934965751 -0.1267396201
BXD27 m 0.015890746 0.0950641643 0.2038260858 -0.1720445938
BXD32 m 0.35939 0.1062849668 0.5695080976 0.1492719024
BXD34 m 0.0757225 0.1062849668 0.2858405976 -0.1343955976
BXD39 m 0.023224896 0.0950641643 0.2111602358 -0.1647104438
BXD40 m 0.008930794 0.0950641643 0.1968661338 -0.1790045458
BXD43 m 0.007879716 0.0950641643 0.1958150558 -0.1800556238
BXD45 m 0.098156 0.0950641643 0.2860913398 -0.0897793398
BXD48 m 0.030337554 0.0950641643 0.2182728938 -0.1575977858
BXD48a m 0.018453232 0.0950641643 0.2063885718 -0.1694821078
BXD49 m 0.784712 0.0950641643 0.9726473398 0.5967766602
BXD51 m 0.008277042 0.0950641643 0.1962123818 -0.1796582978
BXD53 m 0.00640842 0.0950641643 0.1943437598 -0.1815269198
BXD55 m 0.050329366 0.0950641643 0.2382647058 -0.1376059738
BXD6 m 0.070632 0.0950641643 0.2585673398 -0.1173033398
BXD62 m 0.0141208 0.0950641643 0.2020561398 -0.1738145398
BXD63 m 0.007842262 0.0950641643 0.1957776018 -0.1800930778
BXD64 m 0.020082516 0.0950641643 0.2080178558 -0.1678528238
BXD66 m 0.0079744078 0.0708566445 0.1480531395 -0.132104324
BXD67 m 0.021797832 0.0950641643 0.2097331718 -0.1661375078
BXD69 m 0.024729472 0.0950641643 0.2126648118 -0.1632058678
BXD73 m 0.062502 0.0950641643 0.2504373398 -0.1254333398
BXD75 m 0.0325848325 0.1062849668 0.2427029301 -0.1775332651
BXD77 m 0.03819239 0.0950641643 0.2261277298 -0.1497429498
BXD79 m 0.01555641 0.0950641643 0.2034917498 -0.1723789298
BXD8 m 0.01453033 0.1062849668 0.2246484276 -0.1955877676
BXD81 m 0.01774983 0.0950641643 0.2056851698 -0.1701855098
BXD84 m 0.012510418 0.0950641643 0.2004457578 -0.1754249218
BXD87 m 0.029608 0.0950641643 0.2175433398 -0.1583273398
BXD89 m 0.030660396 0.0950641643 0.2185957358 -0.1572749438
BXD90 m 0.00775118 0.1227273084 0.2503746605 -0.2348723005
C57BL/6J m 0.018952 0.0950641643 0.2068873398 -0.1689833398
DBA/2J m 0.007273498 0.0950641643 0.1952088378 -0.1806618418




  GWAS USING LINEAR MIXED MODELS