Project measure / variable:   Schoonjans1   aMCA_liver_HFD

ID, description, units MPD:112813   aMCA_liver_HFD   bile acid α-muricholic acid amount in liver, at 29 wks   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure biomarker quantification
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Schoonjans1 - bile acid α-muricholic acid amount in liver, at 29 wks HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.03517   ng/mL
Median of the strain means0.02542   ng/mL
SD of the strain means± 0.02729
Coefficient of variation (CV)0.7761
Min–max range of strain means0.0146   –   0.15111   ng/mL
Mean sample size per strain4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 34 0.1059 0.0031 2.8564 < 0.0001
Residuals 126 0.1373 0.0011


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.02997 0.02135   5 0.0095492 0.7126 0.01398, 0.06566 -0.19
BXD100 m 0.01867 0.00421564   7 0.00159336 0.2258 0.00998008, 0.02255 -0.6
BXD11 m 0.06079 0.0   1   0.0 0.0 0.06079, 0.06079 0.94
BXD12 m 0.03998 0.03646   3 0.02105 0.9121 0.01649, 0.08198 0.18
BXD27 m 0.03244 0.02749   5 0.01229 0.8473 0.01598, 0.08133 -0.1
BXD32 m 0.15111 0.12063   4 0.06031 0.7982 0.05082, 0.29383 4.25
BXD34 m 0.0458 0.01497   4 0.00748418 0.3268 0.02777, 0.05858 0.39
BXD39 m 0.02395 0.01672   5 0.00747788 0.6983 0.01246, 0.0534 -0.41
BXD40 m 0.02262 0.009346   5 0.00417966 0.4132 0.01375, 0.03719 -0.46
BXD43 m 0.02209 0.01346   5 0.00601925 0.6092 0.00982301, 0.04442 -0.48
BXD45 m 0.07932 0.02401   5 0.01074 0.3027 0.0498, 0.11399 1.62
BXD48 m 0.02049 0.00907013   5 0.00405629 0.4426 0.00979716, 0.03291 -0.54
BXD48a m 0.02195 0.01931   4 0.00965724 0.8801 0.00959406, 0.05076 -0.48
BXD49 m 0.10617 0.12203   4 0.06102 1.1494 0.00970498, 0.28498 2.6
BXD51 m 0.01477 0.00272413   4 0.00136207 0.1845 0.01085, 0.0168 -0.75
BXD53 m 0.0146 0.00052729   3 0.00030443 0.0361 0.0142, 0.0152 -0.75
BXD55 m 0.04594 0.04015   4 0.02007 0.8738 0.01444, 0.10455 0.39
BXD6 m 0.02793 0.01701   5 0.00760528 0.6088 0.01424, 0.05749 -0.27
BXD62 m 0.01548 0.0056652   4 0.0028326 0.3661 0.00963111, 0.02281 -0.72
BXD63 m 0.016 0.00436818   5 0.00195351 0.273 0.01078, 0.02037 -0.7
BXD64 m 0.04183 0.02117   5 0.00946772 0.5061 0.01806, 0.07004 0.24
BXD66 m 0.02323 0.01158   8 0.00409587 0.4988 0.0136, 0.04645 -0.44
BXD67 m 0.02182 0.00838917   5 0.00375175 0.3844 0.01205, 0.03074 -0.49
BXD69 m 0.03175 0.03315   4 0.01657 1.0442 0.01199, 0.08096 -0.13
BXD73 m 0.03729 0.03058   5 0.01368 0.8201 0.01045, 0.08963 0.08
BXD75 m 0.04293 0.02885   4 0.01442 0.672 0.01344, 0.07071 0.28
BXD77 m 0.04165 0.04008   5 0.01792 0.9623 0.01396, 0.11199 0.24
BXD79 m 0.02689 0.02184   5 0.00976607 0.8122 0.01034, 0.06474 -0.3
BXD8 m 0.0323 0.02999   4 0.01499 0.9284 0.01185, 0.07672 -0.11
BXD81 m 0.02054 0.01117   4 0.00558395 0.5438 0.01272, 0.03708 -0.54
BXD84 m 0.01919 0.00808452   4 0.00404226 0.4213 0.01138, 0.03031 -0.59
BXD87 m 0.02315 0.01044   4 0.00521858 0.4508 0.01566, 0.03859 -0.44
BXD89 m 0.03557 0.02725   5 0.01219 0.766 0.01708, 0.0833 0.01
BXD90 m 0.01848 0.01269   3 0.00732481 0.6865 0.00890351, 0.03287 -0.61
C57BL/6J m 0.01862 0.00590689   5 0.00264164 0.3172 0.01295, 0.02855 -0.61
DBA/2J m 0.02073 0.0131   5 0.00585834 0.6318 0.01133, 0.0436 -0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.029966 0.0147647856 0.0591850767 0.0007469233
BXD100 m 0.0186657257 0.0124785214 0.0433603527 -0.0060289013
BXD12 m 0.0399766667 0.0190612563 0.0776983325 0.0022550008
BXD27 m 0.03244 0.0147647856 0.0616590767 0.0032209233
BXD32 m 0.1511125 0.0165075322 0.1837804209 0.1184445791
BXD34 m 0.0457975 0.0165075322 0.0784654209 0.0131295791
BXD39 m 0.023946 0.0147647856 0.0531650767 -0.0052730767
BXD40 m 0.02262 0.0147647856 0.0518390767 -0.0065990767
BXD43 m 0.022094602 0.0147647856 0.0513136787 -0.0071244747
BXD45 m 0.079324 0.0147647856 0.1085430767 0.0501049233
BXD48 m 0.020493432 0.0147647856 0.0497125087 -0.0087256447
BXD48a m 0.021946015 0.0165075322 0.0546139359 -0.0107219059
BXD49 m 0.106168745 0.0165075322 0.1388366659 0.0735008241
BXD51 m 0.0147675 0.0165075322 0.0474354209 -0.0179004209
BXD53 m 0.0146033333 0.0190612563 0.0523249992 -0.0231183325
BXD55 m 0.0459425 0.0165075322 0.0786104209 0.0132745791
BXD6 m 0.027934 0.0147647856 0.0571530767 -0.0012850767
BXD62 m 0.0154752775 0.0165075322 0.0481431984 -0.0171926434
BXD63 m 0.015998 0.0147647856 0.0452170767 -0.0132210767
BXD64 m 0.041834 0.0147647856 0.0710530767 0.0126149233
BXD66 m 0.0232275 0.011672588 0.0463272084 0.0001277916
BXD67 m 0.021822 0.0147647856 0.0510410767 -0.0073970767
BXD69 m 0.031745 0.0165075322 0.0644129209 -0.0009229209
BXD73 m 0.037292 0.0147647856 0.0665110767 0.0080729233
BXD75 m 0.04293 0.0165075322 0.0755979209 0.0102620791
BXD77 m 0.04165 0.0147647856 0.0708690767 0.0124309233
BXD79 m 0.026886 0.0147647856 0.0561050767 -0.0023330767
BXD8 m 0.0323 0.0165075322 0.0649679209 -0.0003679209
BXD81 m 0.020535 0.0165075322 0.0532029209 -0.0121329209
BXD84 m 0.0191875 0.0165075322 0.0518554209 -0.0134804209
BXD87 m 0.02315 0.0165075322 0.0558179209 -0.0095179209
BXD89 m 0.03557 0.0147647856 0.0647890767 0.0063509233
BXD90 m 0.01848117 0.0190612563 0.0562028359 -0.0192404959
C57BL/6J m 0.01862 0.0147647856 0.0478390767 -0.0105990767
DBA/2J m 0.020734 0.0147647856 0.0499530767 -0.0084850767




  GWAS USING LINEAR MIXED MODELS