Project measure / variable:   Schoonjans1   aMCA_liver_CD

ID, description, units MPD:112812   aMCA_liver_CD   bile acid α-muricholic acid amount in liver, at 29 wks   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   33 strains     sex: m     age: 29wks
Procedure biomarker quantification
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Schoonjans1 - bile acid α-muricholic acid amount in liver, at 29 wks CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested33 strains
Mean of the strain means0.02221   ng/mL
Median of the strain means0.01662   ng/mL
SD of the strain means± 0.02909
Coefficient of variation (CV)1.3098
Min–max range of strain means0.00919598   –   0.18026   ng/mL
Mean sample size per strain3.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 0.0041 0.0002 1.0345 0.4376
Residuals 76 0.0113 0.0001


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.01301 0.0   1   0.0 0.0 0.01301, 0.01301 -0.32
BXD11 m 0.01026 0.00041363   2   0.00029248 0.0403 0.00996504, 0.01055 -0.41
BXD12 m 0.03978 0.0344   4 0.0172 0.8648 0.01385, 0.08883 0.6
BXD27 m 0.01903 0.00758325   3 0.00437819 0.3986 0.01445, 0.02778 -0.11
BXD32 m 0.01826 0.00930285   3 0.00537101 0.5095 0.01076, 0.02867 -0.14
BXD34 m 0.01662 0.00620691   5 0.00277582 0.3735 0.0111, 0.02726 -0.19
BXD39 m 0.00934098 0.00060762   2   0.00042966 0.065 0.00891133, 0.00977064 -0.44
BXD40 m 0.01657 0.0122   4 0.00609778 0.7362 0.00936585, 0.03479 -0.19
BXD43 m 0.18026 0.0   1   0.0 0.0 0.18026, 0.18026 5.43
BXD45 m 0.0123 0.00255234   3 0.00147359 0.2074 0.00991071, 0.01499 -0.34
BXD48 m 0.02465 0.01771   3 0.01023 0.7186 0.01275, 0.045 0.08
BXD48a m 0.01161 0.0   1   0.0 0.0 0.01161, 0.01161 -0.36
BXD51 m 0.01721 0.00680108   3 0.00392661 0.3952 0.00935658, 0.02124 -0.17
BXD53 m 0.01611 0.00758609   4 0.00379304 0.4709 0.00923428, 0.02504 -0.21
BXD55 m 0.01859 0.00596472   4 0.00298236 0.3208 0.01245, 0.02388 -0.12
BXD6 m 0.0157 0.00757433   5 0.00338734 0.4824 0.00953854, 0.0272 -0.22
BXD62 m 0.00919598 0.0   1   0.0 0.0 0.00919598, 0.00919598 -0.45
BXD63 m 0.01228 0.00136722   3 0.00078937 0.1113 0.01087, 0.0136 -0.34
BXD64 m 0.01693 0.0060756   3 0.00350775 0.3588 0.01024, 0.0221 -0.18
BXD66 m 0.0205 0.00621606   7 0.00234945 0.3032 0.01058, 0.027 -0.06
BXD67 m 0.01163 0.00095459   2   0.000675 0.082 0.01096, 0.01231 -0.36
BXD69 m 0.01987 0.01092   2   0.00772 0.5495 0.01215, 0.02759 -0.08
BXD73 m 0.01471 0.00538864   5 0.00240987 0.3663 0.00920218, 0.02195 -0.26
BXD77 m 0.01817 0.00907779   5 0.00405971 0.4996 0.01095, 0.03394 -0.14
BXD79 m 0.02058 0.00250617   4 0.00125309 0.1218 0.0177, 0.0238 -0.06
BXD8 m 0.01059 0.00195165   3 0.00112679 0.1844 0.00921236, 0.01282 -0.4
BXD81 m 0.01017 0.00045395   2   0.00032099 0.0446 0.00984802, 0.01049 -0.41
BXD84 m 0.02246 0.0137   5 0.00612683 0.6101 0.00915331, 0.04557 0.01
BXD87 m 0.02885 0.02741   5 0.01226 0.9499 0.00940828, 0.07456 0.23
BXD89 m 0.02529 0.01072   5 0.00479599 0.424 0.01799, 0.04423 0.11
BXD90 m 0.0245 0.0095949   5 0.00429097 0.3916 0.01031, 0.03415 0.08
C57BL/6J m 0.01292 0.0   1   0.0 0.0 0.01292, 0.01292 -0.32
DBA/2J m 0.01491 0.00707739   3 0.00408613 0.4748 0.01015, 0.02304 -0.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD11 m 0.01025752 0.0086095452 0.0274049153 -0.0068898753
BXD12 m 0.0397825 0.0060878678 0.0519075395 0.0276574605
BXD27 m 0.0190266667 0.0070296642 0.0330274563 0.005025877
BXD32 m 0.01826 0.0070296642 0.0322607896 0.0042592104
BXD34 m 0.01662 0.0054451545 0.027464965 0.005775035
BXD39 m 0.009340985 0.0086095452 0.0264883803 -0.0078064103
BXD40 m 0.0165664625 0.0060878678 0.028691502 0.004441423
BXD45 m 0.01230357 0.0070296642 0.0263043596 -0.0016972196
BXD48 m 0.0246466667 0.0070296642 0.0386474563 0.010645877
BXD51 m 0.01720886 0.0070296642 0.0312096496 0.0032080704
BXD53 m 0.01611107 0.0060878678 0.0282361095 0.0039860305
BXD55 m 0.0185925 0.0060878678 0.0307175395 0.0064674605
BXD6 m 0.015701708 0.0054451545 0.026546673 0.004856743
BXD63 m 0.01228 0.0070296642 0.0262807896 -0.0017207896
BXD64 m 0.0169333333 0.0070296642 0.030934123 0.0029325437
BXD66 m 0.0205028571 0.0046019955 0.0296685255 0.0113371888
BXD67 m 0.011635 0.0086095452 0.0287823953 -0.0055123953
BXD69 m 0.01987 0.0086095452 0.0370173953 0.0027226047
BXD73 m 0.014712436 0.0054451545 0.025557401 0.003867471
BXD77 m 0.01817 0.0054451545 0.029014965 0.007325035
BXD79 m 0.020575 0.0060878678 0.0327000395 0.0084499605
BXD8 m 0.01058599 0.0070296642 0.0245867796 -0.0034147996
BXD81 m 0.01016901 0.0086095452 0.0273164053 -0.0069783853
BXD84 m 0.022456662 0.0054451545 0.033301627 0.011611697
BXD87 m 0.028851656 0.0054451545 0.039696621 0.018006691
BXD89 m 0.02529 0.0054451545 0.036134965 0.014445035
BXD90 m 0.024502 0.0054451545 0.035346965 0.013657035
DBA/2J m 0.0149066667 0.0070296642 0.0289074563 0.000905877




  GWAS USING LINEAR MIXED MODELS