Project measure / variable:   Schoonjans1   TLCA_feces_CD

ID, description, units MPD:112800   TLCA_feces_CD   bile acid taurolithocholic acid amount in feces, at 24 wks   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 24wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid taurolithocholic acid amount in feces, at 24 wks CD

BXD11BXD27BXD6DBA/2JBXD8BXD32BXD89BXD69BXD79BXD55BXD75BXD45BXD73BXD84BXD48BXD87BXD100BXD49BXD90BXD51BXD1BXD81BXD12BXD39BXD48aBXD63BXD53BXD64BXD62BXD43BXD66C57BL/6JBXD77BXD67BXD34BXD40 ng/mL 0.000.020.040.060.080.100.120.140.16femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.02085   ng/mL
Median of the strain means0.01856   ng/mL
SD of the strain means± 0.01086
Coefficient of variation (CV)0.5209
Min–max range of strain means0.00746059   –   0.05099   ng/mL
Mean sample size per strain4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 0.0187 0.0005 1.681 0.0188
Residuals 136 0.0432 0.0003


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 36 (36)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 0.01666 0.00385773   5 0.00172523 0.2315 0.01132, 0.02024 -0.39
BXD100 m 0.01926 0.00518943   5 0.00232078 0.2694 0.01237, 0.02555 -0.15
BXD11 m 0.05099 0.05479   4 0.02739 1.0744 0.02337, 0.13317 2.78
BXD12 m 0.0156 0.00507538   4 0.00253769 0.3252 0.0083499, 0.02018 -0.48
BXD27 m 0.04752 0.02974   4 0.01487 0.6259 0.01639, 0.08566 2.46
BXD32 m 0.03297 0.03391   4 0.01695 1.0286 0.01369, 0.08375 1.12
BXD34 m 0.00923581 0.00227608   4 0.00113804 0.2464 0.00679525, 0.01224 -1.07
BXD39 m 0.01498 0.00371802   5 0.00166275 0.2482 0.01165, 0.02082 -0.54
BXD40 m 0.00746059 0.0008122   5 0.00036323 0.1089 0.00678223, 0.00872126 -1.23
BXD43 m 0.01285 0.00595204   4 0.00297602 0.463 0.00684945, 0.02099 -0.74
BXD45 m 0.02226 0.01727   3 0.00996893 0.7757 0.01181, 0.04219 0.13
BXD48 m 0.0195 0.0136   5 0.00608312 0.6976 0.00960657, 0.04264 -0.12
BXD48a m 0.01475 0.00197384   4 0.00098692 0.1338 0.01209, 0.0168 -0.56
BXD49 m 0.01875 0.00726502   5 0.00324902 0.3875 0.0075308, 0.02577 -0.19
BXD51 m 0.01699 0.00438446   5 0.00196079 0.2581 0.01247, 0.0218 -0.36
BXD53 m 0.01378 0.00374376   5 0.00167426 0.2716 0.00909403, 0.01741 -0.65
BXD55 m 0.02427 0.00901418   5 0.00403126 0.3714 0.01534, 0.03832 0.32
BXD6 m 0.04187 0.07147   5 0.03196 1.7067 0.00450284, 0.16883 1.94
BXD62 m 0.01298 0.00126833   5 0.00056721 0.0977 0.01126, 0.01469 -0.72
BXD63 m 0.01452 0.00917706   5 0.0041041 0.6319 0.00824695, 0.02904 -0.58
BXD64 m 0.01306 0.00273704   5 0.00122404 0.2095 0.01076, 0.01702 -0.72
BXD66 m 0.01034 0.00267903   5 0.0011981 0.2591 0.00735207, 0.01468 -0.97
BXD67 m 0.00948912 0.00340306   4 0.00170153 0.3586 0.00675231, 0.01425 -1.05
BXD69 m 0.02539 0.01288   5 0.00576197 0.5074 0.01384, 0.04566 0.42
BXD73 m 0.02148 0.00655957   5 0.00293353 0.3054 0.01332, 0.02824 0.06
BXD75 m 0.02228 0.00651188   5 0.0029122 0.2922 0.0159, 0.03083 0.13
BXD77 m 0.00982861 0.0021656   5 0.00096848 0.2203 0.00724902, 0.01206 -1.01
BXD79 m 0.02446 0.00759566   5 0.00339688 0.3105 0.01565, 0.03594 0.33
BXD8 m 0.03373 0.01471   5 0.00657704 0.436 0.01933, 0.05005 1.19
BXD81 m 0.01637 0.00663065   5 0.00296532 0.405 0.00516517, 0.02276 -0.41
BXD84 m 0.01984 0.00674295   5 0.00301554 0.3398 0.01459, 0.03039 -0.09
BXD87 m 0.01947 0.00353477   5 0.0015808 0.1816 0.0142, 0.02415 -0.13
BXD89 m 0.02757 0.00529475   5 0.00236788 0.1921 0.02184, 0.03484 0.62
BXD90 m 0.01836 0.00871766   5 0.00389866 0.4749 0.01058, 0.03055 -0.23
C57BL/6J m 0.01018 0.0062419   7 0.00235922 0.6133 0.00178042, 0.01844 -0.98
DBA/2J m 0.04142 0.02002   5 0.0089522 0.4833 0.02053, 0.06773 1.89


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.016664 0.0079701448 0.0324254458 0.0009025542
BXD100 m 0.01926 0.0079701448 0.0350214458 0.0034985542
BXD11 m 0.0509925 0.0089108928 0.0686143322 0.0333706678
BXD12 m 0.015604975 0.0089108928 0.0332268072 -0.0020168572
BXD27 m 0.0475175 0.0089108928 0.0651393322 0.0298956678
BXD32 m 0.032965 0.0089108928 0.0505868322 0.0153431678
BXD34 m 0.009235815 0.0089108928 0.0268576472 -0.0083860172
BXD39 m 0.01498 0.0079701448 0.0307414458 -0.0007814458
BXD40 m 0.00746059 0.0079701448 0.0232220358 -0.0083008558
BXD43 m 0.0128548625 0.0089108928 0.0304766947 -0.0047669697
BXD45 m 0.02226 0.0102894128 0.0426079391 0.0019120609
BXD48 m 0.019497314 0.0079701448 0.0352587598 0.0037358682
BXD48a m 0.0147525 0.0089108928 0.0323743322 -0.0028693322
BXD49 m 0.01875016 0.0079701448 0.0345116058 0.0029887142
BXD51 m 0.01699 0.0079701448 0.0327514458 0.0012285542
BXD53 m 0.013782806 0.0079701448 0.0295442518 -0.0019786398
BXD55 m 0.024274 0.0079701448 0.0400354458 0.0085125542
BXD6 m 0.041873166 0.0079701448 0.0576346118 0.0261117202
BXD62 m 0.01298 0.0079701448 0.0287414458 -0.0027814458
BXD63 m 0.014523968 0.0079701448 0.0302854138 -0.0012374778
BXD64 m 0.013062 0.0079701448 0.0288234458 -0.0026994458
BXD66 m 0.010339764 0.0079701448 0.0261012098 -0.0054216818
BXD67 m 0.00948912 0.0089108928 0.0271109522 -0.0081327122
BXD69 m 0.025394 0.0079701448 0.0411554458 0.0096325542
BXD73 m 0.021482 0.0079701448 0.0372434458 0.0057205542
BXD75 m 0.022284 0.0079701448 0.0380454458 0.0065225542
BXD77 m 0.009828606 0.0079701448 0.0255900518 -0.0059328398
BXD79 m 0.024462 0.0079701448 0.0402234458 0.0087005542
BXD8 m 0.033728 0.0079701448 0.0494894458 0.0179665542
BXD81 m 0.016371034 0.0079701448 0.0321324798 0.0006095882
BXD84 m 0.019844 0.0079701448 0.0356054458 0.0040825542
BXD87 m 0.019466 0.0079701448 0.0352274458 0.0037045542
BXD89 m 0.027566 0.0079701448 0.0433274458 0.0118045542
BXD90 m 0.018358 0.0079701448 0.0341194458 0.0025965542
C57BL/6J m 0.0101767643 0.0067360018 0.0234976173 -0.0031440887
DBA/2J m 0.041418 0.0079701448 0.0571794458 0.0256565542




  GWAS USING LINEAR MIXED MODELS

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