Project measure / variable:   Schoonjans1   TDCA_feces_HFD

ID, description, units MPD:112797   TDCA_feces_HFD   bile acid taurodeoxycholic acid amount in feces, at 24 wks   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 24wks
Procedure biomarker quantification
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Schoonjans1 - bile acid taurodeoxycholic acid amount in feces, at 24 wks HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means1.0506   ng/mL
Median of the strain means0.62894   ng/mL
SD of the strain means± 1.2376
Coefficient of variation (CV)1.178
Min–max range of strain means0.07945   –   5.8561   ng/mL
Mean sample size per strain4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 265.7971 7.5942 3.5777 < 0.0001
Residuals 136 288.6764 2.1226


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 2.6903 1.7052   5 0.76257 0.6338 1.1502, 5.4537 1.32
BXD100 m 0.11792 0.05073   4 0.02537 0.4302 0.0723, 0.16422 -0.75
BXD11 m 0.11833 0.17991   3 0.10387 1.5204 0.01402, 0.32608 -0.75
BXD12 m 0.4661 0.41383   4 0.20692 0.8879 0.05949, 0.92253 -0.47
BXD27 m 2.5938 2.3177   6 0.94619 0.8936 0.51816, 7.0607 1.25
BXD32 m 1.1015 0.6725   4 0.33625 0.6105 0.66807, 2.1036 0.04
BXD34 m 0.37728 0.4379   4 0.21895 1.1607 0.12735, 1.0315 -0.54
BXD39 m 0.37096 0.20931   5 0.09361 0.5642 0.09427, 0.56129 -0.55
BXD40 m 0.13568 0.14272   5 0.06383 1.0519 0.05049, 0.38856 -0.74
BXD43 m 1.2646 0.27725   5 0.12399 0.2192 0.88547, 1.5425 0.17
BXD45 m 0.17166 0.0834   5 0.0373 0.4858 0.09349, 0.29816 -0.71
BXD48 m 4.5567 2.3341   5 1.0438 0.5122 1.2679, 6.3271 2.83
BXD48a m 0.44083 0.20713   5 0.09263 0.4699 0.17617, 0.72441 -0.49
BXD49 m 1.2786 0.6121   5 0.27374 0.4787 0.3929, 1.8364 0.18
BXD51 m 5.8561 6.7856   5 3.0346 1.1587 1.8354, 17.847 3.88
BXD53 m 0.53461 0.37016   5 0.16554 0.6924 0.02102, 0.90198 -0.42
BXD55 m 0.85815 0.32067   5 0.14341 0.3737 0.35122, 1.1527 -0.16
BXD6 m 0.09843 0.11488   5 0.05138 1.1671 0.01256, 0.22443 -0.77
BXD62 m 0.31195 0.14061   5 0.06288 0.4507 0.18763, 0.54604 -0.6
BXD63 m 1.8259 0.46687   5 0.20879 0.2557 1.2794, 2.3829 0.63
BXD64 m 0.07945 0.03749   5 0.01676 0.4719 0.03382, 0.13622 -0.78
BXD66 m 0.15763 0.13412   5 0.05998 0.8509 0.076, 0.39318 -0.72
BXD67 m 0.16274 0.14137   5 0.06322 0.8687 0.03732, 0.37714 -0.72
BXD69 m 0.69157 0.42254   5 0.18897 0.611 0.24231, 1.2859 -0.29
BXD73 m 0.32957 0.22973   5 0.10274 0.6971 0.14588, 0.68688 -0.58
BXD75 m 1.5229 1.1294   5 0.5051 0.7416 0.36146, 3.328 0.38
BXD77 m 0.72275 0.24409   5 0.10916 0.3377 0.45437, 1.0738 -0.26
BXD79 m 0.15652 0.20292   5 0.09075 1.2965 0.0556, 0.51935 -0.72
BXD8 m 1.0005 0.6473   4 0.32365 0.647 0.26616, 1.635 -0.04
BXD81 m 1.2474 1.5852   5 0.70894 1.2709 0.03996, 3.7107 0.16
BXD84 m 0.36451 0.07991   3 0.04614 0.2192 0.27361, 0.42369 -0.55
BXD87 m 1.5375 1.4154   5 0.63298 0.9206 0.38453, 3.8589 0.39
BXD89 m 0.5663 0.37102   5 0.16593 0.6552 0.18944, 0.99176 -0.39
BXD90 m 1.144 0.76449   5 0.34189 0.6683 0.55241, 2.4618 0.08
C57BL/6J m 1.3386 1.1163   5 0.49922 0.8339 0.08716, 3.0911 0.23
DBA/2J m 1.631 0.95882   5 0.4288 0.5879 0.90739, 3.2649 0.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 2.69032 0.6515551662 3.9788099404 1.4018300596
BXD100 m 0.117915 0.7284608213 1.5584905476 -1.3226605476
BXD11 m 0.1183333333 0.8411541026 1.7817666937 -1.545100027
BXD12 m 0.466105 0.7284608213 1.9066805476 -0.9744705476
BXD27 m 2.5937933333 0.59478577 3.7700183425 1.4175683242
BXD32 m 1.1015175 0.7284608213 2.5420930476 -0.3390580476
BXD34 m 0.377275 0.7284608213 1.8178505476 -1.0633005476
BXD39 m 0.370958 0.6515551662 1.6594479404 -0.9175319404
BXD40 m 0.135678 0.6515551662 1.4241679404 -1.1528119404
BXD43 m 1.264574 0.6515551662 2.5530639404 -0.0239159404
BXD45 m 0.17166 0.6515551662 1.4601499404 -1.1168299404
BXD48 m 4.55666 0.6515551662 5.8451499404 3.2681700596
BXD48a m 0.440828 0.6515551662 1.7293179404 -0.8476619404
BXD49 m 1.278614 0.6515551662 2.5671039404 -0.0098759404
BXD51 m 5.85612 0.6515551662 7.1446099404 4.5676300596
BXD53 m 0.53461 0.6515551662 1.8230999404 -0.7538799404
BXD55 m 0.85815 0.6515551662 2.1466399404 -0.4303399404
BXD6 m 0.098432 0.6515551662 1.3869219404 -1.1900579404
BXD62 m 0.311952 0.6515551662 1.6004419404 -0.9765379404
BXD63 m 1.82594 0.6515551662 3.1144299404 0.5374500596
BXD64 m 0.079446 0.6515551662 1.3679359404 -1.2090439404
BXD66 m 0.157632 0.6515551662 1.4461219404 -1.1308579404
BXD67 m 0.16274 0.6515551662 1.4512299404 -1.1257499404
BXD69 m 0.691574 0.6515551662 1.9800639404 -0.5969159404
BXD73 m 0.329572 0.6515551662 1.6180619404 -0.9589179404
BXD75 m 1.522944 0.6515551662 2.8114339404 0.2344540596
BXD77 m 0.722752 0.6515551662 2.0112419404 -0.5657379404
BXD79 m 0.156518 0.6515551662 1.4450079404 -1.1319719404
BXD8 m 1.00054 0.7284608213 2.4411155476 -0.4400355476
BXD81 m 1.247378 0.6515551662 2.5358679404 -0.0411119404
BXD84 m 0.3645133333 0.8411541026 2.0279466937 -1.298920027
BXD87 m 1.537452 0.6515551662 2.8259419404 0.2489620596
BXD89 m 0.566302 0.6515551662 1.8547919404 -0.7221879404
BXD90 m 1.143984 0.6515551662 2.4324739404 -0.1445059404
C57BL/6J m 1.338648 0.6515551662 2.6271379404 0.0501580596
DBA/2J m 1.630956 0.6515551662 2.9194459404 0.3424660596




  GWAS USING LINEAR MIXED MODELS