Project measure / variable:   Schoonjans1   TCDCA_feces_HFD

ID, description, units MPD:112795   TCDCA_feces_HFD   bile acid taurocholic acid amount in feces, at 24 wks   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 24wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid taurocholic acid amount in feces, at 24 wks HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.3865   ng/mL
Median of the strain means0.17716   ng/mL
SD of the strain means± 0.7107
Coefficient of variation (CV)1.8388
Min–max range of strain means0.03142   –   3.2318   ng/mL
Mean sample size per strain4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 87.8033 2.5087 5.484 < 0.0001
Residuals 136 62.213 0.4574


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.47301 0.36772   5 0.16445 0.7774 0.10754, 0.92153 0.12
BXD100 m 0.28779 0.10821   4 0.0541 0.376 0.14927, 0.41029 -0.14
BXD11 m 0.17762 0.12963   3 0.07484 0.7298 0.04073, 0.29849 -0.29
BXD12 m 0.24551 0.13558   4 0.06779 0.5522 0.10842, 0.41192 -0.2
BXD27 m 0.54629 0.28854   6 0.1178 0.5282 0.1741, 0.87534 0.22
BXD32 m 0.08094 0.01792   4 0.0089577 0.2214 0.06156, 0.10495 -0.43
BXD34 m 0.10191 0.02053   4 0.01026 0.2015 0.08632, 0.13204 -0.4
BXD39 m 0.15591 0.0512   5 0.0229 0.3284 0.09161, 0.23313 -0.32
BXD40 m 0.09729 0.02873   5 0.01285 0.2953 0.07634, 0.14719 -0.41
BXD43 m 0.17669 0.09105   5 0.04072 0.5153 0.09981, 0.29606 -0.3
BXD45 m 0.09682 0.02375   5 0.01062 0.2453 0.07254, 0.12721 -0.41
BXD48 m 3.11 2.2609   5 1.0111 0.727 0.21219, 6.1759 3.83
BXD48a m 0.23717 0.25464   5 0.11388 1.0736 0.06382, 0.68288 -0.21
BXD49 m 0.07555 0.00996473   5 0.00445636 0.1319 0.06088, 0.08544 -0.44
BXD51 m 3.2318 2.4048   5 1.0755 0.7441 0.35535, 6.9514 4.0
BXD53 m 0.13693 0.15568   5 0.06962 1.1369 0.01837, 0.41033 -0.35
BXD55 m 0.22605 0.03452   5 0.01544 0.1527 0.16504, 0.25046 -0.23
BXD6 m 0.07978 0.04078   5 0.01824 0.5111 0.02734, 0.1334 -0.43
BXD62 m 0.07479 0.03297   5 0.01475 0.4409 0.033, 0.11382 -0.44
BXD63 m 0.11135 0.08785   5 0.03929 0.789 0.02513, 0.24822 -0.39
BXD64 m 0.09726 0.06749   5 0.03018 0.6939 0.04926, 0.21411 -0.41
BXD66 m 0.1559 0.05274   5 0.02359 0.3383 0.10756, 0.23808 -0.32
BXD67 m 0.0752 0.03926   5 0.01756 0.5221 0.03769, 0.13685 -0.44
BXD69 m 0.04236 0.01516   5 0.00678007 0.3579 0.02405, 0.06569 -0.48
BXD73 m 0.20987 0.04732   5 0.02116 0.2255 0.14935, 0.26279 -0.25
BXD75 m 0.90176 1.2235   5 0.54717 1.3568 0.08834, 3.0101 0.73
BXD77 m 0.27106 0.14121   5 0.06315 0.5209 0.05909, 0.41969 -0.16
BXD79 m 0.1031 0.04431   5 0.01982 0.4298 0.029, 0.1482 -0.4
BXD8 m 0.18716 0.05852   4 0.02926 0.3127 0.11653, 0.24677 -0.28
BXD81 m 0.73514 1.5177   5 0.67874 2.0645 0.03428, 3.45 0.49
BXD84 m 0.03142 0.01291   3 0.00745551 0.411 0.01676, 0.04112 -0.5
BXD87 m 0.2664 0.28924   5 0.12935 1.0857 0.07056, 0.76094 -0.17
BXD89 m 0.0978 0.03642   5 0.01629 0.3724 0.06532, 0.15024 -0.41
BXD90 m 0.42213 0.41248   5 0.18447 0.9771 0.07205, 1.1117 0.05
C57BL/6J m 0.27427 0.34486   5 0.15422 1.2573 0.01489, 0.73958 -0.16
DBA/2J m 0.3199 0.25363   5 0.11343 0.7928 0.09323, 0.67825 -0.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.473006 0.3024727139 1.071164175 -0.125152175
BXD100 m 0.2877875 0.3381747748 0.9565486703 -0.3809736703
BXD11 m 0.1776233333 0.3904905945 0.9498422167 -0.59459555
BXD12 m 0.2455125 0.3381747748 0.9142736703 -0.4232486703
BXD27 m 0.54629 0.2761185474 1.092331209 0.000248791
BXD32 m 0.080935 0.3381747748 0.7496961703 -0.5878261703
BXD34 m 0.1019075 0.3381747748 0.7706686703 -0.5668536703
BXD39 m 0.155906 0.3024727139 0.754064175 -0.442252175
BXD40 m 0.09729 0.3024727139 0.695448175 -0.500868175
BXD43 m 0.17669 0.3024727139 0.774848175 -0.421468175
BXD45 m 0.096818 0.3024727139 0.694976175 -0.501340175
BXD48 m 3.109978 0.3024727139 3.708136175 2.511819825
BXD48a m 0.237174 0.3024727139 0.835332175 -0.360984175
BXD49 m 0.075552 0.3024727139 0.673710175 -0.522606175
BXD51 m 3.23181 0.3024727139 3.829968175 2.633651825
BXD53 m 0.136932 0.3024727139 0.735090175 -0.461226175
BXD55 m 0.22605 0.3024727139 0.824208175 -0.372108175
BXD6 m 0.079784 0.3024727139 0.677942175 -0.518374175
BXD62 m 0.074792 0.3024727139 0.672950175 -0.523366175
BXD63 m 0.111348 0.3024727139 0.709506175 -0.486810175
BXD64 m 0.097258 0.3024727139 0.695416175 -0.500900175
BXD66 m 0.155896 0.3024727139 0.754054175 -0.442262175
BXD67 m 0.075204 0.3024727139 0.673362175 -0.522954175
BXD69 m 0.042358 0.3024727139 0.640516175 -0.555800175
BXD73 m 0.209866 0.3024727139 0.808024175 -0.388292175
BXD75 m 0.901758 0.3024727139 1.499916175 0.303599825
BXD77 m 0.27106 0.3024727139 0.869218175 -0.327098175
BXD79 m 0.103102 0.3024727139 0.701260175 -0.495056175
BXD8 m 0.187165 0.3381747748 0.8559261703 -0.4815961703
BXD81 m 0.735142 0.3024727139 1.333300175 0.136983825
BXD84 m 0.0314166667 0.3904905945 0.80363555 -0.7408022167
BXD87 m 0.266404 0.3024727139 0.864562175 -0.331754175
BXD89 m 0.097798 0.3024727139 0.695956175 -0.500360175
BXD90 m 0.422126 0.3024727139 1.020284175 -0.176032175
C57BL/6J m 0.274274 0.3024727139 0.872432175 -0.323884175
DBA/2J m 0.3199 0.3024727139 0.918058175 -0.278258175




  GWAS USING LINEAR MIXED MODELS