Project measure / variable:   Schoonjans1   GLCA_feces_HFD

ID, description, units MPD:112777   GLCA_feces_HFD   bile acid glycolithocholic acid amount in feces, at 24 wks   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   17 strains     sex: m     age: 24wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid glycolithocholic acid amount in feces, at 24 wks HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested17 strains
Mean of the strain means0.01726   ng/mL
Median of the strain means0.01583   ng/mL
SD of the strain means± 0.00553149
Coefficient of variation (CV)0.3204
Min–max range of strain means0.01062   –   0.0288   ng/mL
Mean sample size per strain1.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 6 0.0006 0.0001 1.1724 0.3714
Residuals 15 0.0013 0.0001


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.02381 0.0   1   0.0 0.0 0.02381, 0.02381 1.18
BXD12 m 0.02398 0.0   1   0.0 0.0 0.02398, 0.02398 1.21
BXD27 m 0.01465 0.00473744   3 0.00273516 0.3234 0.01138, 0.02008 -0.47
BXD32 m 0.02073 0.00786803   4 0.00393402 0.3795 0.01147, 0.02895 0.63
BXD43 m 0.01062 0.0   1   0.0 0.0 0.01062, 0.01062 -1.2
BXD48 m 0.02235 0.00602455   2   0.00426 0.2696 0.01809, 0.02661 0.92
BXD49 m 0.02091 0.01184   2   0.008375 0.5663 0.01254, 0.02929 0.66
BXD53 m 0.01695 0.0   1   0.0 0.0 0.01695, 0.01695 -0.06
BXD62 m 0.01252 0.0   1   0.0 0.0 0.01252, 0.01252 -0.86
BXD63 m 0.01583 0.0   1   0.0 0.0 0.01583, 0.01583 -0.26
BXD69 m 0.01503 0.00698515   5 0.00312386 0.4647 0.01122, 0.0275 -0.4
BXD75 m 0.02012 0.0   1   0.0 0.0 0.02012, 0.02012 0.52
BXD8 m 0.01082 0.0   1   0.0 0.0 0.01082, 0.01082 -1.16
BXD81 m 0.01434 0.0005869   2   0.000415 0.0409 0.01392, 0.01475 -0.53
BXD89 m 0.01091 0.0   1   0.0 0.0 0.01091, 0.01091 -1.15
BXD90 m 0.01109 0.0   1   0.0 0.0 0.01109, 0.01109 -1.12
DBA/2J m 0.0288 0.01492   4 0.00746195 0.5181 0.01128, 0.04774 2.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD27 m 0.0146466667 0.0053142631 0.0259737503 0.003319583
BXD32 m 0.020735 0.0046022868 0.0305445422 0.0109254578
BXD48 m 0.02235 0.0065086165 0.0362227876 0.0084772124
BXD49 m 0.020915 0.0065086165 0.0347877876 0.0070422124
BXD69 m 0.015032 0.0041164105 0.0238059213 0.0062580787
BXD81 m 0.014335 0.0065086165 0.0282077876 0.0004622124
DBA/2J m 0.028805 0.0046022868 0.0386145422 0.0189954578




  GWAS USING LINEAR MIXED MODELS