Project measure / variable:   Schoonjans1   GLCA_feces_CD

ID, description, units MPD:112776   GLCA_feces_CD   bile acid glycolithocholic acid amount in feces, at 24 wks   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   5 strains     sex: m     age: 24wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid glycolithocholic acid amount in feces, at 24 wks CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means0.01473   ng/mL
Median of the strain means0.01404   ng/mL
SD of the strain means± 0.00349425
Coefficient of variation (CV)0.2372
Min–max range of strain means0.01136   –   0.01931   ng/mL
Mean sample size per strain1.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 2 0.0 0.0 0.7355 0.5345
Residuals 4 0.0001 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD45 m 0.0173 0.00897319   2   0.006345 0.5188 0.01095, 0.02364 0.73
BXD69 m 0.01136 0.0010253   2   0.000725 0.0903 0.01063, 0.01208 -0.97
BXD73 m 0.01166 0.0   1   0.0 0.0 0.01166, 0.01166 -0.88
BXD79 m 0.01404 0.00271508   3 0.00156755 0.1933 0.01092, 0.01584 -0.2
DBA/2J m 0.01931 0.0   1   0.0 0.0 0.01931, 0.01931 1.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD45 m 0.017295 0.0034697364 0.0269285327 0.0076614673
BXD69 m 0.011355 0.0034697364 0.0209885327 0.0017214673
BXD79 m 0.0140433333 0.0028330279 0.0219090798 0.0061775868




  GWAS USING LINEAR MIXED MODELS