Project measure / variable:   Schoonjans1   GCA_feces_HFD

ID, description, units MPD:112771   GCA_feces_HFD   bile acid glycocholic acid amount in feces, at 24 wks   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 24wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid glycocholic acid amount in feces, at 24 wks HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.04266   ng/mL
Median of the strain means0.0288   ng/mL
SD of the strain means± 0.05043
Coefficient of variation (CV)1.1821
Min–max range of strain means0.00737134   –   0.26853   ng/mL
Mean sample size per strain4.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 0.4374 0.0125 4.56 < 0.0001
Residuals 134 0.3672 0.0027


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.1697 0.10387   5 0.04645 0.6121 0.0789, 0.34566 2.52
BXD100 m 0.00737134 0.00143042   4 0.00071521 0.1941 0.0055396, 0.00902141 -0.7
BXD11 m 0.0121 0.00500745   3 0.00289105 0.4139 0.0086413, 0.01784 -0.61
BXD12 m 0.04774 0.02922   4 0.01461 0.6121 0.00623512, 0.07457 0.1
BXD27 m 0.01966 0.0214   6 0.00873719 1.0889 0.00602113, 0.06267 -0.46
BXD32 m 0.06678 0.06216   4 0.03108 0.9309 0.02514, 0.15929 0.48
BXD34 m 0.02323 0.0143   4 0.00714847 0.6155 0.00528274, 0.03915 -0.39
BXD39 m 0.02917 0.00602996   5 0.00269668 0.2067 0.02094, 0.03718 -0.27
BXD40 m 0.01082 0.00138854   5 0.00062097 0.1284 0.00856931, 0.01197 -0.63
BXD43 m 0.0323 0.03746   5 0.01675 1.1597 0.00594622, 0.09824 -0.21
BXD45 m 0.01482 0.00659891   5 0.00295112 0.4454 0.00962575, 0.02637 -0.55
BXD48 m 0.26853 0.17621   5 0.0788 0.6562 0.04099, 0.47815 4.48
BXD48a m 0.10446 0.07243   5 0.03239 0.6933 0.02214, 0.20797 1.23
BXD49 m 0.02704 0.01208   5 0.00540401 0.4468 0.01934, 0.04804 -0.31
BXD51 m 0.07597 0.04117   5 0.01841 0.542 0.05112, 0.14908 0.66
BXD53 m 0.04606 0.04683   5 0.02094 1.0166 0.00580298, 0.12718 0.07
BXD55 m 0.03183 0.00781937   5 0.00349693 0.2457 0.02092, 0.0411 -0.21
BXD6 m 0.02008 0.00636988   5 0.0028487 0.3172 0.01087, 0.02471 -0.45
BXD62 m 0.00908891 0.00201436   5 0.00090085 0.2216 0.0064095, 0.01105 -0.67
BXD63 m 0.05357 0.03637   5 0.01626 0.6788 0.01972, 0.11247 0.22
BXD64 m 0.01994 0.00339122   5 0.0015166 0.1701 0.01442, 0.02333 -0.45
BXD66 m 0.00917678 0.00382906   5 0.00171241 0.4173 0.00645146, 0.01481 -0.66
BXD67 m 0.02904 0.01629   5 0.0072834 0.5608 0.00735265, 0.05043 -0.27
BXD69 m 0.01627 0.01533   5 0.00685502 0.9423 0.00453695, 0.04152 -0.52
BXD73 m 0.03009 0.00779512   5 0.00348609 0.2591 0.02004, 0.03862 -0.25
BXD75 m 0.03785 0.02204   5 0.00985456 0.5822 0.01411, 0.06871 -0.1
BXD77 m 0.0371 0.031   5 0.01386 0.8357 0.00575301, 0.08247 -0.11
BXD79 m 0.0074727 0.00260476   5 0.00116488 0.3486 0.003795, 0.01028 -0.7
BXD8 m 0.0335 0.03676   4 0.01838 1.0973 0.00942557, 0.0883 -0.18
BXD81 m 0.07651 0.14881   5 0.06655 1.945 0.00578171, 0.34255 0.67
BXD84 m 0.00952598 0.00560661   3 0.00323698 0.5886 0.00489676, 0.01576 -0.66
BXD87 m 0.02855 0.01236   5 0.00552656 0.4329 0.01425, 0.04425 -0.28
BXD89 m 0.02245 0.01295   5 0.00579093 0.5768 0.01081, 0.04153 -0.4
BXD90 m 0.01365 0.01039   3 0.00599827 0.7609 0.00167319, 0.02017 -0.58
C57BL/6J m 0.07222 0.08853   5 0.03959 1.2259 0.00638203, 0.2186 0.59
DBA/2J m 0.02223 0.00810451   5 0.00362445 0.3646 0.01628, 0.03399 -0.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.169698 0.0234108164 0.2160005158 0.1233954842
BXD100 m 0.0073713425 0.0261740885 0.0591391289 -0.0443964439
BXD11 m 0.0120974767 0.0302232341 0.0718737675 -0.0476788142
BXD12 m 0.04773628 0.0261740885 0.0995040664 -0.0040315064
BXD27 m 0.019655105 0.0213710538 0.0619233256 -0.0226131156
BXD32 m 0.0667775 0.0261740885 0.1185452864 0.0150097136
BXD34 m 0.023228185 0.0261740885 0.0749959714 -0.0285396014
BXD39 m 0.02917 0.0234108164 0.0754725158 -0.0171325158
BXD40 m 0.010817862 0.0234108164 0.0571203778 -0.0354846538
BXD43 m 0.032301244 0.0234108164 0.0786037598 -0.0140012718
BXD45 m 0.01481715 0.0234108164 0.0611196658 -0.0314853658
BXD48 m 0.268534 0.0234108164 0.3148365158 0.2222314842
BXD48a m 0.104462 0.0234108164 0.1507645158 0.0581594842
BXD49 m 0.027044 0.0234108164 0.0733465158 -0.0192585158
BXD51 m 0.075966 0.0234108164 0.1222685158 0.0296634842
BXD53 m 0.046062596 0.0234108164 0.0923651118 -0.0002399198
BXD55 m 0.03183 0.0234108164 0.0781325158 -0.0144725158
BXD6 m 0.020084 0.0234108164 0.0663865158 -0.0262185158
BXD62 m 0.009088906 0.0234108164 0.0553914218 -0.0372136098
BXD63 m 0.053572 0.0234108164 0.0998745158 0.0072694842
BXD64 m 0.019942 0.0234108164 0.0662445158 -0.0263605158
BXD66 m 0.00917678 0.0234108164 0.0554792958 -0.0371257358
BXD67 m 0.02904253 0.0234108164 0.0753450458 -0.0172599858
BXD69 m 0.016267186 0.0234108164 0.0625697018 -0.0300353298
BXD73 m 0.030088 0.0234108164 0.0763905158 -0.0162145158
BXD75 m 0.037846 0.0234108164 0.0841485158 -0.0084565158
BXD77 m 0.037096602 0.0234108164 0.0833991178 -0.0092059138
BXD79 m 0.007472698 0.0234108164 0.0537752138 -0.0388298178
BXD8 m 0.0335038925 0.0261740885 0.0852716789 -0.0182638939
BXD81 m 0.076506656 0.0234108164 0.1228091718 0.0302041402
BXD84 m 0.00952598 0.0302232341 0.0693022708 -0.0502503108
BXD87 m 0.028546 0.0234108164 0.0748485158 -0.0177565158
BXD89 m 0.022448 0.0234108164 0.0687505158 -0.0238545158
BXD90 m 0.0136543967 0.0302232341 0.0734306875 -0.0461218942
C57BL/6J m 0.072218406 0.0234108164 0.1185209218 0.0259158902
DBA/2J m 0.02223 0.0234108164 0.0685325158 -0.0240725158




  GWAS USING LINEAR MIXED MODELS