Project measure / variable:   Schoonjans1   UDCA_plasma_t60_HFD

ID, description, units MPD:112751   UDCA_plasma_t60_HFD   plasma bile acid ursodeoxycholic acid amount, glucose kinetic test, at 20 wks of age, after 60 min   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   28 strains     sex: m     age: 20wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Schoonjans1 - plasma bile acid ursodeoxycholic acid amount, glucose kinetic test, at 20 wks of age, after 60 min HFD

BXD49BXD62BXD40BXD27BXD12BXD69BXD6BXD64BXD39BXD11BXD87BXD79BXD77BXD55BXD45BXD48aBXD81BXD48BXD89BXD73BXD53BXD1BXD84BXD34BXD90BXD100BXD32BXD63 ng/mL 0102030405060708090femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means5.0543   ng/mL
Median of the strain means3.6422   ng/mL
SD of the strain means± 4.5541
Coefficient of variation (CV)0.901
Min–max range of strain means1.6621   –   22.616   ng/mL
Mean sample size per strain2.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 22 2063.3881 93.7904 0.6693 0.8451
Residuals 46 6446.3718 140.1385


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 28 (28)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 2.606 0.63357   2   0.448 0.2431 2.158, 3.054 -0.54
BXD100 m 1.985 0.76792   2   0.543 0.3869 1.442, 2.528 -0.67
BXD11 m 4.717 4.377   2   3.095 0.9279 1.622, 7.812 -0.07
BXD12 m 6.9185 5.8021   4 2.901 0.8386 2.254, 15.342 0.41
BXD27 m 9.225 9.2108   2   6.513 0.9985 2.712, 15.738 0.92
BXD32 m 1.862 0.17536   2   0.124 0.0942 1.738, 1.986 -0.7
BXD34 m 2.452 0.0   1   0.0 0.0 2.452, 2.452 -0.57
BXD39 m 4.784 0.0   1   0.0 0.0 4.784, 4.784 -0.06
BXD40 m 10.47 0.39891   4 0.19946 0.0381 10.116, 10.88 1.19
BXD45 m 3.6016 0.8181   5 0.36587 0.2271 2.352, 4.408 -0.32
BXD48 m 2.963 1.7409   2   1.231 0.5875 1.732, 4.194 -0.46
BXD48a m 3.067 1.134   4 0.567 0.3697 1.45, 3.942 -0.44
BXD49 m 22.616 38.897   5 17.395 1.7199 1.644, 91.73 3.86
BXD53 m 2.612 0.0   1   0.0 0.0 2.612, 2.612 -0.54
BXD55 m 3.6828 1.8606   5 0.83209 0.5052 2.194, 6.662 -0.3
BXD6 m 4.8515 2.499   3 1.4428 0.5151 2.682, 7.584 -0.04
BXD62 m 15.15 8.72   2   6.166 0.5756 8.984, 21.316 2.22
BXD63 m 1.6621 0.37349   2   0.2641 0.2247 1.398, 1.9262 -0.74
BXD64 m 4.818 0.0   1   0.0 0.0 4.818, 4.818 -0.05
BXD69 m 6.855 6.6058   2   4.671 0.9636 2.184, 11.526 0.4
BXD73 m 2.62 1.4264   3 0.82354 0.5444 1.214, 4.066 -0.53
BXD77 m 3.699 1.4156   2   1.001 0.3827 2.698, 4.7 -0.3
BXD79 m 3.7408 2.0163   5 0.9017 0.539 1.614, 6.908 -0.29
BXD81 m 3.0393 0.70858   3 0.4091 0.2331 2.398, 3.8 -0.44
BXD84 m 2.542 0.0   1   0.0 0.0 2.542, 2.542 -0.55
BXD87 m 3.7913 1.902   3 1.0981 0.5017 2.438, 5.966 -0.28
BXD89 m 2.9127 0.86789   3 0.50108 0.298 1.958, 3.654 -0.47
BXD90 m 2.277 0.38042   2   0.269 0.1671 2.008, 2.546 -0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 2.606 8.3707382527 19.4554221885 -14.2434221885
BXD100 m 1.985 8.3707382527 18.8344221885 -14.8644221885
BXD11 m 4.717 8.3707382527 21.5664221885 -12.1324221885
BXD12 m 6.9185 5.919005782 18.8328406886 -4.9958406886
BXD27 m 9.225 8.3707382527 26.0744221885 -7.6244221885
BXD32 m 1.862 8.3707382527 18.7114221885 -14.9874221885
BXD40 m 10.47 5.919005782 22.3843406886 -1.4443406886
BXD45 m 3.6016 5.2941197151 14.2581102747 -7.0549102747
BXD48 m 2.963 8.3707382527 19.8124221885 -13.8864221885
BXD48a m 3.067 5.919005782 14.9813406886 -8.8473406886
BXD49 m 22.616 5.2941197151 33.2725102747 11.9594897253
BXD55 m 3.6828 5.2941197151 14.3393102747 -6.9737102747
BXD6 m 4.8515333333 6.8346791632 18.6090289409 -8.9059622742
BXD62 m 15.15 8.3707382527 31.9994221885 -1.6994221885
BXD63 m 1.6621 8.3707382527 18.5115221885 -15.1873221885
BXD69 m 6.855 8.3707382527 23.7044221885 -9.9944221885
BXD73 m 2.62 6.8346791632 16.3774956075 -11.1374956075
BXD77 m 3.699 8.3707382527 20.5484221885 -13.1504221885
BXD79 m 3.7408 5.2941197151 14.3973102747 -6.9157102747
BXD81 m 3.0393333333 6.8346791632 16.7968289409 -10.7181622742
BXD87 m 3.7913333333 6.8346791632 17.5488289409 -9.9661622742
BXD89 m 2.9126666667 6.8346791632 16.6701622742 -10.8448289409
BXD90 m 2.277 8.3707382527 19.1264221885 -14.5724221885




  GWAS USING LINEAR MIXED MODELS

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