Project measure / variable:   Schoonjans1   UDCA_plasma_t60_CD

ID, description, units MPD:112750   UDCA_plasma_t60_CD   plasma bile acid ursodeoxycholic acid amount, glucose kinetic test, at 20 wks of age, after 60 min   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   28 strains     sex: m     age: 20wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means5.088   ng/mL
Median of the strain means3.6585   ng/mL
SD of the strain means± 4.9258
Coefficient of variation (CV)0.9681
Min–max range of strain means1.6333   –   27.978   ng/mL
Mean sample size per strain2.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 19 2673.9598 140.7347 1.0731 0.4173
Residuals 33 4328.0031 131.1516


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 28 (28)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 2.038 0.0   1   0.0 0.0 2.038, 2.038 -0.62
BXD11 m 1.652 0.0   1   0.0 0.0 1.652, 1.652 -0.7
BXD12 m 3.434 2.9359   2   2.076 0.855 1.358, 5.51 -0.34
BXD27 m 4.859 0.99419   2   0.703 0.2046 4.156, 5.562 -0.05
BXD32 m 6.8607 6.8951   3 3.9809 1.005 2.274, 14.79 0.36
BXD34 m 2.143 0.62933   2   0.445 0.2937 1.698, 2.588 -0.6
BXD40 m 3.684 3.6038   3 2.0807 0.9782 1.302, 7.83 -0.29
BXD43 m 5.02 0.0   1   0.0 0.0 5.02, 5.02 -0.01
BXD45 m 7.797 6.9169   2   4.891 0.8871 2.906, 12.688 0.55
BXD48 m 2.143 1.13   2   0.799 0.5273 1.344, 2.942 -0.6
BXD48a m 1.6333 0.21757   3 0.12561 0.1332 1.442, 1.87 -0.7
BXD49 m 4.006 2.7291   3 1.5757 0.6813 1.488, 6.906 -0.22
BXD55 m 3.433 1.2172   4 0.60862 0.3546 1.828, 4.712 -0.34
BXD6 m 27.978 30.511   5 13.645 1.0905 5.566, 80.0 4.65
BXD62 m 4.96 1.5613   2   1.104 0.3148 3.856, 6.064 -0.03
BXD63 m 3.584 0.0   1   0.0 0.0 3.584, 3.584 -0.31
BXD69 m 5.094 0.0   1   0.0 0.0 5.094, 5.094 0.0
BXD73 m 5.5647 6.3059   3 3.6407 1.1332 1.9, 12.846 0.1
BXD75 m 2.976 0.0   1   0.0 0.0 2.976, 2.976 -0.43
BXD77 m 9.716 10.215   3 5.8976 1.0514 3.244, 21.492 0.94
BXD79 m 3.387 1.97   2   1.393 0.5816 1.994, 4.78 -0.35
BXD8 m 2.012 0.0   1   0.0 0.0 2.012, 2.012 -0.62
BXD81 m 3.31 0.0   1   0.0 0.0 3.31, 3.31 -0.36
BXD87 m 7.059 2.2415   2   1.585 0.3175 5.474, 8.644 0.4
BXD89 m 7.256 6.8731   2   4.86 0.9472 2.396, 12.116 0.44
BXD90 m 3.633 0.45113   2   0.319 0.1242 3.314, 3.952 -0.3
C57BL/6J m 4.7735 4.3482   4 2.1741 0.9109 1.738, 11.212 -0.06
DBA/2J m 2.459 0.97722   2   0.691 0.3974 1.768, 3.15 -0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD12 m 3.434 8.0978888553 19.9092787531 -13.0412787531
BXD27 m 4.859 8.0978888553 21.3342787531 -11.6162787531
BXD32 m 6.8606666667 6.6118985631 20.3126754384 -6.591342105
BXD34 m 2.143 8.0978888553 18.6182787531 -14.3322787531
BXD40 m 3.684 6.6118985631 17.1360087717 -9.7680087717
BXD45 m 7.797 8.0978888553 24.2722787531 -8.6782787531
BXD48 m 2.143 8.0978888553 18.6182787531 -14.3322787531
BXD48a m 1.6333333333 6.6118985631 15.085342105 -11.8186754384
BXD49 m 4.006 6.6118985631 17.4580087717 -9.4460087717
BXD55 m 3.433 5.7260721228 15.0827813282 -8.2167813282
BXD6 m 27.9784 5.1215546043 38.3982811892 17.5585188108
BXD62 m 4.96 8.0978888553 21.4352787531 -11.5152787531
BXD73 m 5.5646666667 6.6118985631 19.0166754384 -7.887342105
BXD77 m 9.716 6.6118985631 23.1680087717 -3.7360087717
BXD79 m 3.387 8.0978888553 19.8622787531 -13.0882787531
BXD87 m 7.059 8.0978888553 23.5342787531 -9.4162787531
BXD89 m 7.256 8.0978888553 23.7312787531 -9.2192787531
BXD90 m 3.633 8.0978888553 20.1082787531 -12.8422787531
C57BL/6J m 4.7735 5.7260721228 16.4232813282 -6.8762813282
DBA/2J m 2.459 8.0978888553 18.9342787531 -14.0162787531




  GWAS USING LINEAR MIXED MODELS

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