Project measure / variable:   Schoonjans1   THDCA_plasma_t60_CD

ID, description, units MPD:112746   THDCA_plasma_t60_CD   plasma bile acid taurohyodeoxycholic acid amount, glucose kinetic test, at 20 wks of age, after 60 min   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 20wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - plasma bile acid taurohyodeoxycholic acid amount, glucose kinetic test, at 20 wks of age, after 60 min CD

BXD73BXD48BXD45BXD40BXD12BXD53BXD69BXD84BXD8BXD75BXD81BXD49C57BL/6JBXD32BXD87BXD79BXD48aBXD89BXD63BXD100BXD77BXD39BXD27BXD90BXD64BXD34BXD1BXD55BXD11BXD62BXD51BXD66BXD43DBA/2JBXD67BXD6 ng/mL 020406080100120140160180200femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means23.704   ng/mL
Median of the strain means17.427   ng/mL
SD of the strain means± 19.017
Coefficient of variation (CV)0.8023
Min–max range of strain means0.764   –   75.85   ng/mL
Mean sample size per strain4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 54384.7952 1553.8513 3.6285 < 0.0001
Residuals 127 54385.4083 428.2316


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 36 (36)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 8.876 4.4018   5 1.9685 0.4959 2.622, 14.87 -0.78
BXD100 m 14.786 7.7627   5 3.4716 0.525 8.676, 27.556 -0.47
BXD11 m 7.6925 4.7705   4 2.3852 0.6201 1.392, 12.952 -0.84
BXD12 m 49.139 28.574   3 16.497 0.5815 23.62, 80.01 1.34
BXD27 m 13.483 17.946   4 8.9732 1.331 3.882, 40.384 -0.54
BXD32 m 26.922 21.221   5 9.4904 0.7883 3.462, 53.1 0.17
BXD34 m 10.774 3.5077   5 1.5687 0.3256 5.962, 15.568 -0.68
BXD39 m 13.733 5.5398   3 3.1984 0.4034 8.978, 19.816 -0.52
BXD40 m 53.12 17.736   4 8.8681 0.3339 30.732, 71.18 1.55
BXD43 m 3.9671 4.2148   7 1.5931 1.0624 1.176, 13.092 -1.04
BXD45 m 57.18 28.233   4 14.117 0.4938 33.832, 97.25 1.76
BXD48 m 64.1 43.738   5 19.56 0.6823 17.772, 134.1 2.12
BXD48a m 22.354 20.841   4 10.421 0.9323 3.03, 49.08 -0.07
BXD49 m 28.581 11.94   5 5.3395 0.4177 10.79, 40.676 0.26
BXD51 m 7.074 2.3224   5 1.0386 0.3283 3.984, 9.42 -0.87
BXD53 m 45.37 31.581   4 15.79 0.6961 10.686, 86.51 1.14
BXD55 m 7.8436 5.0582   5 2.2621 0.6449 3.118, 14.218 -0.83
BXD6 m 0.764 0.15274   2   0.108 0.1999 0.656, 0.872 -1.21
BXD62 m 7.1004 7.0746   5 3.1639 0.9964 1.406, 16.626 -0.87
BXD63 m 14.853 11.174   4 5.5869 0.7523 4.972, 26.624 -0.47
BXD64 m 10.966 3.0815   5 1.3781 0.281 6.966, 14.966 -0.67
BXD66 m 3.972 1.8458   5 0.82548 0.4647 1.74, 6.852 -1.04
BXD67 m 1.643 1.2728   4 0.63639 0.7747 0.73, 3.486 -1.16
BXD69 m 40.656 15.039   5 6.7257 0.3699 15.042, 51.11 0.89
BXD73 m 75.85 89.38   4 44.689 1.1783 13.586, 207.4 2.74
BXD75 m 31.315 24.21   5 10.827 0.7731 10.184, 63.58 0.4
BXD77 m 14.581 8.9567   5 4.0056 0.6143 4.762, 22.616 -0.48
BXD79 m 24.459 8.3506   5 3.7345 0.3414 10.656, 30.008 0.04
BXD8 m 34.307 12.128   5 5.4238 0.3535 21.822, 52.53 0.56
BXD81 m 28.932 26.27   3 15.167 0.908 7.45, 58.22 0.27
BXD84 m 38.958 10.772   5 4.8175 0.2765 20.406, 46.034 0.8
BXD87 m 26.354 10.133   5 4.5318 0.3845 12.6, 39.648 0.14
BXD89 m 20.0 17.705   5 7.9179 0.8852 4.836, 49.378 -0.19
BXD90 m 12.027 12.355   5 5.5254 1.0273 2.54, 33.034 -0.61
C57BL/6J m 28.476 7.6223   5 3.4088 0.2677 17.59, 36.89 0.25
DBA/2J m 3.1315 2.4842   4 1.2421 0.7933 0.024, 5.836 -1.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 8.876 9.2545292853 27.1890433342 -9.4370433342
BXD100 m 14.7856 9.2545292853 33.0986433342 -3.5274433342
BXD11 m 7.6925 10.3468782908 28.1671048851 -12.7821048851
BXD12 m 49.1386666667 11.947545933 72.7807039506 25.4966293827
BXD27 m 13.483475 10.3468782908 33.9580798851 -6.9911298851
BXD32 m 26.9216 9.2545292853 45.2346433342 8.6085566658
BXD34 m 10.774 9.2545292853 29.0870433342 -7.5390433342
BXD39 m 13.7326666667 11.947545933 37.3747039506 -9.9093706173
BXD40 m 53.122 10.3468782908 73.5966048851 32.6473951149
BXD43 m 3.9671428571 7.821504801 19.4444893481 -11.5102036338
BXD45 m 57.1805 10.3468782908 77.6551048851 36.7058951149
BXD48 m 64.1008 9.2545292853 82.4138433342 45.7877566658
BXD48a m 22.354 10.3468782908 42.8286048851 1.8793951149
BXD49 m 28.5812 9.2545292853 46.8942433342 10.2681566658
BXD51 m 7.074 9.2545292853 25.3870433342 -11.2390433342
BXD53 m 45.37 10.3468782908 65.8446048851 24.8953951149
BXD55 m 7.8436 9.2545292853 26.1566433342 -10.4694433342
BXD6 m 0.764 14.6326956071 29.7194639128 -28.1914639128
BXD62 m 7.1004 9.2545292853 25.4134433342 -11.2126433342
BXD63 m 14.853 10.3468782908 35.3276048851 -5.6216048851
BXD64 m 10.966 9.2545292853 29.2790433342 -7.3470433342
BXD66 m 3.972 9.2545292853 22.2850433342 -14.3410433342
BXD67 m 1.643 10.3468782908 22.1176048851 -18.8316048851
BXD69 m 40.6564 9.2545292853 58.9694433342 22.3433566658
BXD73 m 75.853 10.3468782908 96.3276048851 55.3783951149
BXD75 m 31.3148 9.2545292853 49.6278433342 13.0017566658
BXD77 m 14.5808 9.2545292853 32.8938433342 -3.7322433342
BXD79 m 24.4588 9.2545292853 42.7718433342 6.1457566658
BXD8 m 34.3068 9.2545292853 52.6198433342 15.9937566658
BXD81 m 28.932 11.947545933 52.5740372839 5.2899627161
BXD84 m 38.958 9.2545292853 57.2710433342 20.6449566658
BXD87 m 26.354 9.2545292853 44.6670433342 8.0409566658
BXD89 m 20.0004 9.2545292853 38.3134433342 1.6873566658
BXD90 m 12.0272 9.2545292853 30.3402433342 -6.2858433342
C57BL/6J m 28.4756 9.2545292853 46.7886433342 10.1625566658
DBA/2J m 3.1315 10.3468782908 23.6061048851 -17.3431048851




  GWAS USING LINEAR MIXED MODELS

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