Project measure / variable:   Schoonjans1   GCA_plasma_t60_HFD

ID, description, units MPD:112733   GCA_plasma_t60_HFD   plasma bile acid glycocholic acid amount, glucose kinetic test, at 20 wks of age, after 60 min   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   33 strains     sex: m     age: 20wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - plasma bile acid glycocholic acid amount, glucose kinetic test, at 20 wks of age, after 60 min HFD

C57BL/6JBXD81BXD64BXD69BXD73BXD48aBXD6BXD49BXD53BXD34BXD77BXD75BXD32BXD55BXD63BXD40BXD39BXD48BXD27BXD12BXD1BXD45BXD8BXD84BXD79BXD67BXD89BXD11BXD66BXD100BXD51BXD90BXD87 ng/mL 01234567891011femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested33 strains
Mean of the strain means1.6811   ng/mL
Median of the strain means0.90467   ng/mL
SD of the strain means± 1.8279
Coefficient of variation (CV)1.0873
Min–max range of strain means0.05   –   7.077   ng/mL
Mean sample size per strain3.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 30 360.8853 12.0295 2.2401 0.0019
Residuals 89 477.9383 5.3701


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 33 (33)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 0.666 0.42909   5 0.1919 0.6443 0.22, 1.344 -0.56
BXD100 m 0.1328 0.18656   5 0.08343 1.4048 0.01, 0.46 -0.85
BXD11 m 0.20133 0.30215   3 0.17445 1.5008 0.016, 0.55 -0.81
BXD12 m 0.75667 0.51328   3 0.29635 0.6784 0.174, 1.142 -0.51
BXD27 m 0.8505 1.5745   4 0.78723 1.8512 0.014, 3.21 -0.45
BXD32 m 1.4275 0.39193   4 0.19596 0.2746 0.92, 1.872 -0.14
BXD34 m 2.5025 3.5488   4 1.7744 1.4181 0.238, 7.778 0.45
BXD39 m 0.90467 1.2397   3 0.71574 1.3703 0.122, 2.334 -0.42
BXD40 m 0.977 0.71403   4 0.35701 0.7308 0.102, 1.846 -0.39
BXD45 m 0.4528 0.23443   5 0.10484 0.5177 0.082, 0.732 -0.67
BXD48 m 0.868 1.2056   5 0.53917 1.389 0.06, 2.966 -0.44
BXD48a m 3.055 3.9078   4 1.9539 1.2791 0.158, 8.466 0.75
BXD49 m 2.6048 1.5963   5 0.71388 0.6128 0.982, 5.14 0.51
BXD51 m 0.123 0.00989949   2   0.007 0.0805 0.116, 0.13 -0.85
BXD53 m 2.592 3.5137   4 1.7569 1.3556 0.032, 7.702 0.5
BXD55 m 1.2568 0.42974   5 0.19219 0.3419 0.61, 1.684 -0.23
BXD6 m 2.8685 3.6591   4 1.8296 1.2756 0.18182, 8.258 0.65
BXD63 m 1.0616 1.1291   5 0.50496 1.0636 0.062, 2.3476 -0.34
BXD64 m 4.516 3.8655   5 1.7287 0.856 2.386, 11.398 1.55
BXD66 m 0.148 0.0   1   0.0 0.0 0.148, 0.148 -0.84
BXD67 m 0.2328 0.13465   5 0.06022 0.5784 0.07, 0.4 -0.79
BXD69 m 4.035 3.6704   4 1.8352 0.9096 0.278, 8.58 1.29
BXD73 m 3.8767 1.3163   3 0.75997 0.3395 2.722, 5.31 1.2
BXD75 m 2.1255 2.6792   4 1.3396 1.2605 0.452, 6.126 0.24
BXD77 m 2.4205 2.5457   4 1.2728 1.0517 0.082, 6.046 0.4
BXD79 m 0.29933 0.261   3 0.15069 0.8719 0.038, 0.56 -0.76
BXD8 m 0.41667 0.35113   3 0.20272 0.8427 0.124, 0.806 -0.69
BXD81 m 6.3968 4.9655   5 2.2207 0.7763 0.526, 11.416 2.58
BXD84 m 0.309 0.21637   2   0.153 0.7002 0.156, 0.462 -0.75
BXD87 m 0.05 0.02546   2   0.018 0.5091 0.032, 0.068 -0.89
BXD89 m 0.2125 0.0971   4 0.04855 0.4569 0.158, 0.358 -0.8
BXD90 m 0.06 0.0   1   0.0 0.0 0.06, 0.06 -0.89
C57BL/6J m 7.077 6.0995   2   4.313 0.8619 2.764, 11.39 2.95


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.666 1.036348681 2.7252027544 -1.3932027544
BXD100 m 0.1328 1.036348681 2.1920027544 -1.9264027544
BXD11 m 0.2013333333 1.3379203941 2.8597526581 -2.4570859914
BXD12 m 0.7566666667 1.3379203941 3.4150859914 -1.9017526581
BXD27 m 0.8505 1.1586730495 3.1527586691 -1.4517586691
BXD32 m 1.4275 1.1586730495 3.7297586691 -0.8747586691
BXD34 m 2.5025 1.1586730495 4.8047586691 0.2002413309
BXD39 m 0.9046666667 1.3379203941 3.5630859914 -1.7537526581
BXD40 m 0.977 1.1586730495 3.2792586691 -1.3252586691
BXD45 m 0.4528 1.036348681 2.5120027544 -1.6064027544
BXD48 m 0.868 1.036348681 2.9272027544 -1.1912027544
BXD48a m 3.055 1.1586730495 5.3572586691 0.7527413309
BXD49 m 2.6048 1.036348681 4.6640027544 0.5455972456
BXD51 m 0.123 1.638611141 3.378885434 -3.132885434
BXD53 m 2.592 1.1586730495 4.8942586691 0.2897413309
BXD55 m 1.2568 1.036348681 3.3160027544 -0.8024027544
BXD6 m 2.868455 1.1586730495 5.1707136691 0.5661963309
BXD63 m 1.061594 1.036348681 3.1207967544 -0.9976087544
BXD64 m 4.516 1.036348681 6.5752027544 2.4567972456
BXD67 m 0.2328 1.036348681 2.2920027544 -1.8264027544
BXD69 m 4.035 1.1586730495 6.3372586691 1.7327413309
BXD73 m 3.8766666667 1.3379203941 6.5350859914 1.2182473419
BXD75 m 2.1255 1.1586730495 4.4277586691 -0.1767586691
BXD77 m 2.4205 1.1586730495 4.7227586691 0.1182413309
BXD79 m 0.2993333333 1.3379203941 2.9577526581 -2.3590859914
BXD8 m 0.4166666667 1.3379203941 3.0750859914 -2.2417526581
BXD81 m 6.3968 1.036348681 8.4560027544 4.3375972456
BXD84 m 0.309 1.638611141 3.564885434 -2.946885434
BXD87 m 0.05 1.638611141 3.305885434 -3.205885434
BXD89 m 0.2125 1.1586730495 2.5147586691 -2.0897586691
C57BL/6J m 7.077 1.638611141 10.332885434 3.821114566




  GWAS USING LINEAR MIXED MODELS

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