Project measure / variable:   Schoonjans1   CA_plasma_t60_HFD

ID, description, units MPD:112727   CA_plasma_t60_HFD   plasma bile acid cholic acid amount, glucose kinetic test, at 20 wks of age, after 60 min   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 20wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Schoonjans1 - plasma bile acid cholic acid amount, glucose kinetic test, at 20 wks of age, after 60 min HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means17.894   ng/mL
Median of the strain means10.286   ng/mL
SD of the strain means± 21.5
Coefficient of variation (CV)1.2015
Min–max range of strain means1.0485   –   107.6   ng/mL
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 73062.7469 2087.5071 1.159 0.2757
Residuals 117 210725.4176 1801.0719


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 10.818 12.977   5 5.8034 1.1996 1.202, 33.022 -0.33
BXD100 m 2.4815 2.2368   8 0.79082 0.9014 0.34, 6.306 -0.72
BXD11 m 8.928 5.3509   3 3.0893 0.5993 5.392, 15.084 -0.42
BXD12 m 9.9885 9.0315   4 4.5157 0.9042 1.11, 20.484 -0.37
BXD27 m 22.433 37.218   5 16.644 1.6591 0.688, 88.2 0.21
BXD32 m 13.357 11.888   4 5.9441 0.89 2.2, 27.618 -0.21
BXD34 m 7.6335 6.3482   4 3.1741 0.8316 2.208, 14.918 -0.48
BXD39 m 22.014 20.426   3 11.793 0.9279 0.406, 41.006 0.19
BXD40 m 31.587 17.772   4 8.8862 0.5627 18.56, 56.24 0.64
BXD43 m 1.0485 1.2472   4 0.62359 1.1895 0.066, 2.862 -0.78
BXD45 m 5.3572 1.9557   5 0.87463 0.3651 2.388, 7.602 -0.58
BXD48 m 24.511 42.827   5 19.153 1.7473 2.28, 100.8 0.31
BXD48a m 28.644 34.526   4 17.263 1.2053 7.674, 80.19 0.5
BXD49 m 107.6 187.3   5 83.79 1.7411 7.886, 441.9 4.17
BXD51 m 3.3974 2.089   3 1.2061 0.6149 1.028, 4.9741 -0.67
BXD53 m 11.126 13.417   5 6.0004 1.2059 1.926, 33.73 -0.31
BXD55 m 28.65 26.675   5 11.93 0.9311 5.284, 59.8 0.5
BXD6 m 34.371 35.979   5 16.09 1.0468 1.306, 87.41 0.77
BXD62 m 24.116 36.562   4 18.281 1.5161 2.446, 78.62 0.29
BXD63 m 7.7987 7.9804   5 3.5689 1.0233 0.8625, 21.331 -0.47
BXD64 m 10.583 18.396   5 8.2269 1.7382 0.956, 43.368 -0.34
BXD66 m 5.3507 4.1464   3 2.3939 0.7749 2.894, 10.138 -0.58
BXD67 m 8.1612 8.0988   5 3.6219 0.9924 1.408, 20.75 -0.45
BXD69 m 78.26 104.4   4 52.2 1.334 12.86, 234.2 2.81
BXD73 m 16.164 9.8066   3 5.6619 0.6067 8.196, 27.116 -0.08
BXD75 m 23.518 22.46   4 11.23 0.955 0.87, 49.098 0.26
BXD77 m 9.8668 13.003   5 5.8153 1.3179 0.664, 32.324 -0.37
BXD79 m 4.7012 2.1192   5 0.94774 0.4508 2.236, 7.106 -0.61
BXD8 m 8.058 6.1829   2   4.372 0.7673 3.686, 12.43 -0.46
BXD81 m 12.813 10.808   5 4.8333 0.8435 1.592, 25.022 -0.24
BXD84 m 1.3064 1.133   5 0.50668 0.8672 0.292, 2.724 -0.77
BXD87 m 7.466 7.3952   4 3.6976 0.9905 3.254, 18.522 -0.49
BXD89 m 4.67 3.743   5 1.6739 0.8015 0.73, 9.678 -0.62
BXD90 m 2.5117 1.0283   3 0.59367 0.4094 1.6032, 3.628 -0.72
C57BL/6J m 42.246 3.549   2   2.5095 0.084 39.737, 44.756 1.13
DBA/2J m 2.6573 1.8776   3 1.084 0.7066 0.598, 4.274 -0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 10.818 18.97931477 48.4055383608 -26.7695383608
BXD100 m 2.4815 15.0044657756 32.1970582148 -27.2340582148
BXD11 m 8.928 24.5021900088 57.4533033655 -39.5973033655
BXD12 m 9.9885 21.219518996 52.0126454409 -32.0356454409
BXD27 m 22.4332 18.97931477 60.0207383608 -15.1543383608
BXD32 m 13.357 21.219518996 55.3811454409 -28.6671454409
BXD34 m 7.6335 21.219518996 49.6576454409 -34.3906454409
BXD39 m 22.014 24.5021900088 70.5393033655 -26.5113033655
BXD40 m 31.5865 21.219518996 73.6106454409 -10.4376454409
BXD43 m 1.0485 21.219518996 43.0726454409 -40.9756454409
BXD45 m 5.3572 18.97931477 42.9447383608 -32.2303383608
BXD48 m 24.5108 18.97931477 62.0983383608 -13.0767383608
BXD48a m 28.6445 21.219518996 70.6686454409 -13.3796454409
BXD49 m 107.6012 18.97931477 145.1887383608 70.0136616392
BXD51 m 3.3973666667 24.5021900088 51.9226700322 -45.1279366988
BXD53 m 11.1264 18.97931477 48.7139383608 -26.4611383608
BXD55 m 28.6496 18.97931477 66.2371383608 -8.9379383608
BXD6 m 34.3712 18.97931477 71.9587383608 -3.2163383608
BXD62 m 24.1155 21.219518996 66.1396454409 -17.9086454409
BXD63 m 7.7987 18.97931477 45.3862383608 -29.7888383608
BXD64 m 10.5832 18.97931477 48.1707383608 -27.0043383608
BXD66 m 5.3506666667 24.5021900088 53.8759700322 -43.1746366988
BXD67 m 8.1612 18.97931477 45.7487383608 -29.4263383608
BXD69 m 78.256 21.219518996 120.2801454409 36.2318545591
BXD73 m 16.164 24.5021900088 64.6893033655 -32.3613033655
BXD75 m 23.518 21.219518996 65.5421454409 -18.5061454409
BXD77 m 9.8668 18.97931477 47.4543383608 -27.7207383608
BXD79 m 4.7012 18.97931477 42.2887383608 -32.8863383608
BXD8 m 8.058 30.0089315512 67.4891164296 -51.3731164296
BXD81 m 12.8132 18.97931477 50.4007383608 -24.7743383608
BXD84 m 1.3064 18.97931477 38.8939383608 -36.2811383608
BXD87 m 7.466 21.219518996 49.4901454409 -34.5581454409
BXD89 m 4.67 18.97931477 42.2575383608 -32.9175383608
BXD90 m 2.5117333333 24.5021900088 51.0370366988 -46.0135700322
C57BL/6J m 42.2465 30.0089315512 101.6776164296 -17.1846164296
DBA/2J m 2.6573333333 24.5021900088 51.1826366988 -45.8679700322




  GWAS USING LINEAR MIXED MODELS