Project measure / variable:   Schoonjans1   CA_plasma_t60_CD

ID, description, units MPD:112726   CA_plasma_t60_CD   plasma bile acid cholic acid amount, glucose kinetic test, at 20 wks of age, after 60 min   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 20wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - plasma bile acid cholic acid amount, glucose kinetic test, at 20 wks of age, after 60 min CD

BXD6C57BL/6JBXD32BXD77BXD87BXD49BXD40BXD55BXD12BXD73BXD48aBXD34BXD45BXD69BXD1BXD81BXD27BXD48BXD75BXD79BXD62BXD39BXD89BXD90BXD63BXD51BXD100BXD8BXD43BXD66BXD53DBA/2JBXD84BXD11BXD67BXD64 ng/mL 050100150200250300350400450500femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means37.015   ng/mL
Median of the strain means11.791   ng/mL
SD of the strain means± 51.78
Coefficient of variation (CV)1.3988
Min–max range of strain means0.7548   –   202.4   ng/mL
Mean sample size per strain4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 457473.2999 13070.6657 2.7407 < 0.0001
Residuals 128 610448.6416 4769.13


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 36 (36)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 21.194 41.578   5 18.594 1.9618 1.012, 95.52 -0.31
BXD100 m 5.066 2.5868   5 1.1569 0.5106 2.174, 9.026 -0.62
BXD11 m 1.1355 1.1376   4 0.56881 1.0019 0.232, 2.8 -0.69
BXD12 m 49.864 60.94   3 35.186 1.2222 4.34, 119.1 0.25
BXD27 m 13.779 8.9848   4 4.4924 0.6521 4.3136, 25.598 -0.45
BXD32 m 137.4 144.9   5 64.81 1.0547 15.556, 374.9 1.94
BXD34 m 32.029 20.051   5 8.967 0.626 12.88, 62.18 -0.1
BXD39 m 7.4353 7.7374   3 4.4672 1.0406 2.694, 16.364 -0.57
BXD40 m 77.35 73.2   4 36.599 0.9463 14.096, 183.0 0.78
BXD43 m 3.9203 5.0729   6 2.071 1.294 0.506, 14.116 -0.64
BXD45 m 21.888 39.146   4 19.573 1.7885 1.422, 80.59 -0.29
BXD48 m 13.35 9.5729   5 4.2811 0.7171 4.808, 26.818 -0.46
BXD48a m 33.956 22.274   4 11.137 0.656 5.59, 58.57 -0.06
BXD49 m 98.23 115.8   5 51.78 1.1787 8.668, 298.8 1.18
BXD51 m 5.3848 3.7117   5 1.6599 0.6893 1.01, 9.5 -0.61
BXD53 m 2.2555 2.1156   4 1.0578 0.938 0.518, 4.858 -0.67
BXD55 m 74.93 62.5   5 27.951 0.8341 15.084, 178.4 0.73
BXD6 m 202.4 190.1   5 85.02 0.9391 56.43, 521.5 3.19
BXD62 m 7.5096 4.4492   5 1.9897 0.5925 2.794, 14.326 -0.57
BXD63 m 5.645 3.032   4 1.516 0.5371 2.986, 8.77 -0.61
BXD64 m 0.7548 0.48117   5 0.21518 0.6375 0.05, 1.326 -0.7
BXD66 m 3.306 0.84586   5 0.37828 0.2559 2.396, 4.51 -0.65
BXD67 m 0.97867 1.0536   3 0.60828 1.0765 0.036, 2.116 -0.7
BXD69 m 21.763 26.937   5 12.046 1.2377 6.124, 69.78 -0.29
BXD73 m 37.584 32.859   4 16.429 0.8743 12.178, 84.55 0.01
BXD75 m 10.233 11.189   5 5.0038 1.0934 1.9, 29.07 -0.52
BXD77 m 130.0 141.1   5 63.09 1.0852 18.774, 316.0 1.8
BXD79 m 10.019 7.5173   5 3.3618 0.7503 2.794, 20.808 -0.52
BXD8 m 4.4164 6.9248   5 3.0969 1.568 0.142, 16.678 -0.63
BXD81 m 19.137 15.909   3 9.1851 0.8313 4.014, 35.73 -0.35
BXD84 m 1.1612 0.9407   5 0.42069 0.8101 0.276, 2.754 -0.69
BXD87 m 103.0 81.84   5 36.599 0.7947 41.672, 244.1 1.27
BXD89 m 6.44 7.6839   5 3.4363 1.1931 0.162, 15.454 -0.59
BXD90 m 6.1904 7.5258   5 3.3657 1.2157 0.57, 15.186 -0.6
C57BL/6J m 160.6 199.4   5 89.17 1.2417 17.348, 505.9 2.39
DBA/2J m 2.2515 1.4343   4 0.71713 0.637 0.472, 3.914 -0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 21.1936 30.8840736058 82.3030161681 -39.9158161681
BXD100 m 5.066 30.8840736058 66.1754161681 -56.0434161681
BXD11 m 1.1355 34.5294440024 69.4579043086 -67.1869043086
BXD12 m 49.864 39.8711675795 128.7559170385 -29.0279170385
BXD27 m 13.7789 34.5294440024 82.1013043086 -54.5435043086
BXD32 m 137.4064 30.8840736058 198.5158161681 76.2969838319
BXD34 m 32.0292 30.8840736058 93.1386161681 -29.0802161681
BXD39 m 7.4353333333 39.8711675795 86.3272503718 -71.4565837051
BXD40 m 77.3515 34.5294440024 145.6739043086 9.0290956914
BXD43 m 3.9203333333 28.1931729693 59.7053428521 -51.8646761854
BXD45 m 21.888 34.5294440024 90.2104043086 -46.4344043086
BXD48 m 13.35 30.8840736058 74.4594161681 -47.7594161681
BXD48a m 33.9555 34.5294440024 102.2779043086 -34.3669043086
BXD49 m 98.2316 30.8840736058 159.3410161681 37.1221838319
BXD51 m 5.3848 30.8840736058 66.4942161681 -55.7246161681
BXD53 m 2.2555 34.5294440024 70.5779043086 -66.0669043086
BXD55 m 74.93 30.8840736058 136.0394161681 13.8205838319
BXD6 m 202.446 30.8840736058 263.5554161681 141.3365838319
BXD62 m 7.5096 30.8840736058 68.6190161681 -53.5998161681
BXD63 m 5.645 34.5294440024 73.9674043086 -62.6774043086
BXD64 m 0.7548 30.8840736058 61.8642161681 -60.3546161681
BXD66 m 3.306 30.8840736058 64.4154161681 -57.8034161681
BXD67 m 0.9786666667 39.8711675795 79.8705837051 -77.9132503718
BXD69 m 21.7632 30.8840736058 82.8726161681 -39.3462161681
BXD73 m 37.5835 34.5294440024 105.9059043086 -30.7389043086
BXD75 m 10.2332 30.8840736058 71.3426161681 -50.8762161681
BXD77 m 129.9864 30.8840736058 191.0958161681 68.8769838319
BXD79 m 10.0188 30.8840736058 71.1282161681 -51.0906161681
BXD8 m 4.4164 30.8840736058 65.5258161681 -56.6930161681
BXD81 m 19.1366666667 39.8711675795 98.0285837051 -59.7552503718
BXD84 m 1.1612 30.8840736058 62.2706161681 -59.9482161681
BXD87 m 102.9844 30.8840736058 164.0938161681 41.8749838319
BXD89 m 6.44 30.8840736058 67.5494161681 -54.6694161681
BXD90 m 6.1904 30.8840736058 67.2998161681 -54.9190161681
C57BL/6J m 160.5772 30.8840736058 221.6866161681 99.4677838319
DBA/2J m 2.2515 34.5294440024 70.5739043086 -66.0709043086




  GWAS USING LINEAR MIXED MODELS

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