Project measure / variable:   Schoonjans1   UDCA_plasma_t30_CD

ID, description, units MPD:112714   UDCA_plasma_t30_CD   plasma bile acid ursodeoxycholic acid amount, glucose kinetic test, at 20 wks of age, after 30 min   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   28 strains     sex: m     age: 20wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Schoonjans1 - plasma bile acid ursodeoxycholic acid amount, glucose kinetic test, at 20 wks of age, after 30 min CD

BXD6BXD32BXD73BXD77BXD27BXD49BXD1BXD12BXD55BXD40BXD79BXD48BXD87BXD45C57BL/6JBXD34BXD89BXD43BXD39DBA/2JBXD81BXD90BXD53BXD69BXD62BXD100BXD8BXD75 ng/mL 01020304050607080femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means7.1907   ng/mL
Median of the strain means5.3708   ng/mL
SD of the strain means± 6.1416
Coefficient of variation (CV)0.8541
Min–max range of strain means1.43   –   31.883   ng/mL
Mean sample size per strain2.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 16 3500.3602 218.7725 1.0547 0.4314
Residuals 33 6845.1687 207.4294


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 28 (28)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 9.3781 0.0   1   0.0 0.0 9.3781, 9.3781 0.36
BXD100 m 1.801 0.02687   2   0.019 0.0149 1.782, 1.82 -0.88
BXD12 m 8.67 0.0   1   0.0 0.0 8.67, 8.67 0.24
BXD27 m 10.828 5.1053   2   3.61 0.4715 7.218, 14.438 0.59
BXD32 m 17.488 24.43   3 14.104 1.3969 1.598, 45.618 1.68
BXD34 m 5.324 2.3646   2   1.672 0.4441 3.652, 6.996 -0.3
BXD39 m 4.328 4.4152   2   3.122 1.0201 1.206, 7.45 -0.47
BXD40 m 7.6687 4.185   3 2.4162 0.5457 4.444, 12.398 0.08
BXD43 m 5.076 0.0   1   0.0 0.0 5.076, 5.076 -0.34
BXD45 m 5.3765 6.1463   4 3.0732 1.1432 1.786, 14.564 -0.3
BXD48 m 7.106 0.0   1   0.0 0.0 7.106, 7.106 -0.01
BXD49 m 9.886 4.305   3 2.4855 0.4355 5.334, 13.892 0.44
BXD53 m 2.776 0.0   1   0.0 0.0 2.776, 2.776 -0.72
BXD55 m 8.4296 7.6823   5 3.4356 0.9113 2.342, 18.38 0.2
BXD6 m 31.883 33.934   5 15.176 1.0643 4.302, 81.61 4.02
BXD62 m 1.952 0.25465   3 0.14702 0.1305 1.744, 2.236 -0.85
BXD69 m 2.458 0.0   1   0.0 0.0 2.458, 2.458 -0.77
BXD73 m 12.305 14.63   2   10.345 1.189 1.96, 22.65 0.83
BXD75 m 1.43 0.0   1   0.0 0.0 1.43, 1.43 -0.94
BXD77 m 10.997 11.813   3 6.8202 1.0742 3.036, 24.57 0.62
BXD79 m 7.664 0.0   1   0.0 0.0 7.664, 7.664 0.08
BXD8 m 1.513 0.07495   2   0.053 0.0495 1.46, 1.566 -0.92
BXD81 m 3.3929 2.12   2   1.4991 0.6248 1.8938, 4.892 -0.62
BXD87 m 5.633 1.2799   2   0.905 0.2272 4.728, 6.538 -0.25
BXD89 m 5.306 0.0   1   0.0 0.0 5.306, 5.306 -0.31
BXD90 m 3.138 0.0   1   0.0 0.0 3.138, 3.138 -0.66
C57BL/6J m 5.3652 4.2887   5 1.918 0.7994 1.734, 12.086 -0.3
DBA/2J m 4.166 0.0   1   0.0 0.0 4.166, 4.166 -0.49


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 m 1.801 10.1840403118 22.5205858042 -18.9185858042
BXD27 m 10.828 10.1840403118 31.5475858042 -9.8915858042
BXD32 m 17.488 8.3152340946 34.4054709673 0.5705290327
BXD34 m 5.324 10.1840403118 26.0435858042 -15.3955858042
BXD39 m 4.328 10.1840403118 25.0475858042 -16.3915858042
BXD40 m 7.6686666667 8.3152340946 24.586137634 -9.2488043007
BXD45 m 5.3765 7.2012039643 20.0274596255 -9.2744596255
BXD49 m 9.886 8.3152340946 26.8034709673 -7.0314709673
BXD55 m 8.4296 6.4409526336 21.5338166633 -4.6746166633
BXD6 m 31.8828 6.4409526336 44.9870166633 18.7785833367
BXD62 m 1.952 8.3152340946 18.8694709673 -14.9654709673
BXD73 m 12.305 10.1840403118 33.0245858042 -8.4145858042
BXD77 m 10.9973333333 8.3152340946 27.9148043007 -5.920137634
BXD8 m 1.513 10.1840403118 22.2325858042 -19.2065858042
BXD81 m 3.3929 10.1840403118 24.1124858042 -17.3266858042
BXD87 m 5.633 10.1840403118 26.3525858042 -15.0865858042
C57BL/6J m 5.3652 6.4409526336 18.4694166633 -7.7390166633




  GWAS USING LINEAR MIXED MODELS

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