Project measure / variable:   Schoonjans1   CDCA_plasma_t30_HFD

ID, description, units MPD:112693   CDCA_plasma_t30_HFD   plasma bile acid chenodeoxycholic acid amount, glucose kinetic test, at 20 wks of age, after 30 min   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 20wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - plasma bile acid chenodeoxycholic acid amount, glucose kinetic test, at 20 wks of age, after 30 min HFD

BXD49BXD69BXD27BXD55BXD62BXD11BXD40BXD6BXD45BXD79BXD12BXD89BXD1BXD48aBXD73BXD39BXD32BXD75BXD8BXD53BXD64BXD34BXD87BXD48BXD77BXD90BXD81C57BL/6JBXD67BXD66BXD63BXD51DBA/2JBXD100BXD84BXD43 ng/mL 051015202530354045femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means1.8088   ng/mL
Median of the strain means1.2742   ng/mL
SD of the strain means± 2.0417
Coefficient of variation (CV)1.1288
Min–max range of strain means0.15653   –   11.137   ng/mL
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 683.019 19.5148 1.0388 0.4253
Residuals 116 2179.1775 18.786


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 36 (36)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 1.4765 0.7116   5 0.31824 0.4819 0.52, 2.34 -0.16
BXD100 m 0.3745 0.64616   8 0.22845 1.7254 0.01, 1.944 -0.7
BXD11 m 3.2247 2.825   3 1.631 0.8761 0.184, 5.768 0.69
BXD12 m 1.749 1.4367   4 0.71836 0.8215 0.272, 3.664 -0.03
BXD27 m 4.842 8.5544   5 3.8256 1.7667 0.448, 20.112 1.49
BXD32 m 1.417 1.0957   4 0.54783 0.7732 0.496, 2.718 -0.19
BXD34 m 1.0075 0.78015   4 0.39008 0.7743 0.374, 2.066 -0.39
BXD39 m 1.4233 0.64909   3 0.37475 0.456 0.768, 2.066 -0.19
BXD40 m 2.5355 1.4966   4 0.74832 0.5903 1.096, 4.06 0.36
BXD43 m 0.15653 0.15481   2   0.10947 0.989 0.04706, 0.266 -0.81
BXD45 m 1.8812 0.75715   5 0.33861 0.4025 1.248, 2.944 0.04
BXD48 m 0.8652 1.2938   5 0.57863 1.4954 0.1, 3.154 -0.46
BXD48a m 1.447 1.2059   4 0.60293 0.8334 0.662, 3.244 -0.18
BXD49 m 11.137 19.841   5 8.873 1.7815 0.402, 46.32 4.57
BXD51 m 0.39887 0.00160513   2   0.001135 0.004 0.39773, 0.4 -0.69
BXD53 m 1.1052 0.36862   5 0.16485 0.3335 0.67, 1.554 -0.34
BXD55 m 3.9368 4.5986   5 2.0565 1.1681 0.812, 11.902 1.04
BXD6 m 1.9496 1.5318   5 0.68503 0.7857 0.324, 4.3526 0.07
BXD62 m 3.64 5.5316   4 2.7658 1.5197 0.506, 11.928 0.9
BXD63 m 0.4388 0.25563   5 0.11432 0.5826 0.168, 0.838 -0.67
BXD64 m 1.0152 0.69942   5 0.31279 0.6889 0.488, 2.198 -0.39
BXD66 m 0.587 0.16263   2   0.115 0.2771 0.472, 0.702 -0.6
BXD67 m 0.6866 0.46768   5 0.20915 0.6812 0.098, 1.405 -0.55
BXD69 m 5.6385 4.006   4 2.003 0.7105 2.68, 11.516 1.88
BXD73 m 1.4373 1.2896   3 0.74452 0.8972 0.546, 2.916 -0.18
BXD75 m 1.4025 1.128   4 0.56398 0.8043 0.078, 2.62 -0.2
BXD77 m 0.8412 0.38954   5 0.17421 0.4631 0.246, 1.262 -0.47
BXD79 m 1.8776 0.58967   5 0.26371 0.3141 1.202, 2.554 0.03
BXD8 m 1.146 0.77493   3 0.44741 0.6762 0.33, 1.872 -0.32
BXD81 m 0.738 0.3292   5 0.14722 0.4461 0.444, 1.164 -0.52
BXD84 m 0.3349 0.28977   5 0.12959 0.8652 0.1125, 0.822 -0.72
BXD87 m 0.984 0.66228   4 0.33114 0.6731 0.364, 1.85 -0.4
BXD89 m 1.4968 1.1511   5 0.51477 0.769 0.708, 3.478 -0.15
BXD90 m 0.8355 0.98511   4 0.49255 1.1791 0.274, 2.308 -0.48
C57BL/6J m 0.70533 0.29155   3 0.16833 0.4134 0.404, 0.986 -0.54
DBA/2J m 0.3838 0.0874   3 0.05046 0.2277 0.308, 0.47941 -0.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 1.47652 1.9383504661 5.315667335 -2.362627335
BXD100 m 0.3745 1.5324005941 3.4096124629 -2.6606124629
BXD11 m 3.2246666667 2.5023996914 8.1809845641 -1.7316512307
BXD12 m 1.749 2.1671417032 6.0412972084 -2.5432972084
BXD27 m 4.842 1.9383504661 8.681147335 1.002852665
BXD32 m 1.417 2.1671417032 5.7092972084 -2.8752972084
BXD34 m 1.0075 2.1671417032 5.2997972084 -3.2847972084
BXD39 m 1.4233333333 2.5023996914 6.3796512307 -3.5329845641
BXD40 m 2.5355 2.1671417032 6.8277972084 -1.7567972084
BXD43 m 0.15653 3.0648011883 6.2267549258 -5.9136949258
BXD45 m 1.8812 1.9383504661 5.720347335 -1.957947335
BXD48 m 0.8652 1.9383504661 4.704347335 -2.973947335
BXD48a m 1.447 2.1671417032 5.7392972084 -2.8452972084
BXD49 m 11.1368 1.9383504661 14.975947335 7.297652665
BXD51 m 0.398865 3.0648011883 6.4690899258 -5.6713599258
BXD53 m 1.1052 1.9383504661 4.944347335 -2.733947335
BXD55 m 3.9368 1.9383504661 7.775947335 0.097652665
BXD6 m 1.94958 1.9383504661 5.788727335 -1.889567335
BXD62 m 3.64 2.1671417032 7.9322972084 -0.6522972084
BXD63 m 0.4388 1.9383504661 4.277947335 -3.400347335
BXD64 m 1.0152 1.9383504661 4.854347335 -2.823947335
BXD66 m 0.587 3.0648011883 6.6572249258 -5.4832249258
BXD67 m 0.6866 1.9383504661 4.525747335 -3.152547335
BXD69 m 5.6385 2.1671417032 9.9307972084 1.3462027916
BXD73 m 1.4373333333 2.5023996914 6.3936512307 -3.5189845641
BXD75 m 1.4025 2.1671417032 5.6947972084 -2.8897972084
BXD77 m 0.8412 1.9383504661 4.680347335 -2.997947335
BXD79 m 1.8776 1.9383504661 5.716747335 -1.961547335
BXD8 m 1.146 2.5023996914 6.1023178974 -3.8103178974
BXD81 m 0.738 1.9383504661 4.577147335 -3.101147335
BXD84 m 0.3349 1.9383504661 4.174047335 -3.504247335
BXD87 m 0.984 2.1671417032 5.2762972084 -3.3082972084
BXD89 m 1.4968 1.9383504661 5.335947335 -2.342347335
BXD90 m 0.8355 2.1671417032 5.1277972084 -3.4567972084
C57BL/6J m 0.7053333333 2.5023996914 5.6616512307 -4.2509845641
DBA/2J m 0.3838033333 2.5023996914 5.3401212307 -4.5725145641




  GWAS USING LINEAR MIXED MODELS

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