Project measure / variable:   CSNA03   amplitude_cc

ID, description, units MPD:112546   amplitude_cc   peak-to-trough, indicating level of synchronization in circadian rhythm (max counts/s), in fibroblast cultures, CC   [n/s]  
Data set, strains CSNA03   CC w/par   40 strains     sex: both     age: 8-12wks
Procedure in vitro assay
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  STRAIN COMPARISON PLOT
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CSNA03 - peak-to-trough, indicating level of synchronization in circadian rhythm (max counts/s), in fibroblast cultures, CC



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested35 strains34 strains
Mean of the strain means138.8   n/s 153.1   n/s
Median of the strain means95.62   n/s 94.75   n/s
SD of the strain means± 135.7 ± 166.0
Coefficient of variation (CV)0.9778 1.0843
Min–max range of strain means2.484   –   590.6   n/s 5.0405   –   718.7   n/s
Mean sample size per strain3.9   mice 4.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 15123.1273 15123.1273 0.2877 0.5923
strain 23 6891600.2976 299634.7955 5.7012 < 0.0001
sex:strain 23 814902.4091 35430.5395 0.6741 0.8675
Residuals 197 10353652.7874 52556.6131


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 316.3 212.7   10 67.27 0.6726 83.93, 623.5 1.31
129S1/SvImJ m 502.2 589.2   9 196.4 1.1733 39.663, 1763.0 2.1
A/J f 97.18 30.173   9 10.058 0.3105 34.489, 140.4 -0.31
A/J m 290.2 207.9   10 65.73 0.7162 34.489, 563.3 0.83
C57BL/6J f 237.7 109.5   10 34.612 0.4604 102.0, 371.7 0.73
C57BL/6J m 201.5 157.2   10 49.724 0.7803 6.914, 469.3 0.29
CAST/EiJ f 413.4 324.0   10 102.5 0.7837 28.163, 1107.0 2.02
CAST/EiJ m 444.8 297.0   10 93.93 0.6677 47.289, 872.8 1.76
CC001/UncJ f 116.0 7.9196   2   5.6 0.0683 110.4, 121.6 -0.17
CC001/UncJ m 107.1 0.0   1   0.0 0.0 107.1, 107.1 -0.28
CC002/UncJ f 88.12 81.99   2   57.98 0.9304 30.146, 146.1 -0.37
CC002/UncJ m 129.5 48.147   2   34.045 0.3719 95.41, 163.5 -0.14
CC003/UncJ f 2.484 0.0   1   0.0 0.0 2.484, 2.484 -1.0
CC004/TauUncJ f 297.8 42.639   2   30.15 0.1432 267.6, 327.9 1.17
CC004/TauUncJ m 413.7 119.2   2   84.3 0.2882 329.4, 498.0 1.57
CC005/TauUncJ f 116.3 65.19   4 32.597 0.5604 28.212, 184.2 -0.17
CC005/TauUncJ m 134.2 78.21   3 45.153 0.5826 84.75, 224.4 -0.11
CC008/GeniUncJ f 89.73 125.1   2   88.47 1.3943 1.2625, 178.2 -0.36
CC008/GeniUncJ m 69.62 91.9   2   64.98 1.32 4.6383, 134.6 -0.5
CC010/GeniUncJ m 98.16 1.492   2   1.055 0.0152 97.1, 99.21 -0.33
CC011/UncJ f 145.8 115.8   3 66.84 0.794 13.624, 229.2 0.05
CC011/UncJ m 72.92 90.8   6 37.068 1.2451 4.071, 200.4 -0.48
CC012/GeniUncJ f 126.1 43.152   5 19.298 0.3423 73.98, 185.1 -0.09
CC012/GeniUncJ m 70.89 53.92   6 22.011 0.7606 2.068, 140.3 -0.5
CC013/GeniUncJ f 94.66 104.4   3 60.28 1.1029 1.852, 207.7 -0.33
CC013/GeniUncJ m 55.71 73.53   2   51.99 1.3199 3.716, 107.7 -0.59
CC016/GeniUncJ f 318.7 341.7   2   241.6 1.0722 77.06, 560.3 1.33
CC016/GeniUncJ m 13.079 1.5592   2   1.1025 0.1192 11.976, 14.181 -0.84
CC017/UncJ m 83.19 44.831   3 25.883 0.5389 32.359, 117.1 -0.42
CC018/UncJ f 213.4 60.67   2   42.9 0.2843 170.5, 256.3 0.55
CC018/UncJ m 112.3 116.0   3 66.96 1.0329 44.392, 246.2 -0.25
CC019/TauUncJ f 95.62 84.45   3 48.757 0.8832 18.241, 185.7 -0.32
CC019/TauUncJ m 90.74 0.48083   2   0.34 0.0053 90.4, 91.08 -0.38
CC023/GeniUncJ f 7.39 1.0691   2   0.756 0.1447 6.634, 8.146 -0.97
CC023/GeniUncJ m 106.6 23.695   2   16.755 0.2222 89.89, 123.4 -0.28
CC025/GeniUncJ f 56.4 52.83   5 23.625 0.9366 4.945, 134.7 -0.61
CC025/GeniUncJ m 81.86 83.84   4 41.92 1.0242 7.6345, 196.1 -0.43
CC028/GeniUncJ f 116.5 18.407   3 10.627 0.158 100.3, 136.5 -0.16
CC028/GeniUncJ m 74.72 52.45   3 30.279 0.7019 14.246, 107.8 -0.47
CC030/GeniUncJ f 31.235 39.081   2   27.634 1.2512 3.601, 58.87 -0.79
CC030/GeniUncJ m 5.0405 0.0   1   0.0 0.0 5.0405, 5.0405 -0.89
CC035/UncJ f 65.5 0.0   1   0.0 0.0 65.5, 65.5 -0.54
CC037/TauUncJ f 17.765 0.0   1   0.0 0.0 17.765, 17.765 -0.89
CC041/TauUncJ f 157.7 139.0   4 69.48 0.8812 7.2145, 287.5 0.14
CC041/TauUncJ m 91.34 79.48   6 32.449 0.8702 11.515, 196.5 -0.37
CC043/GeniUncJ m 26.544 0.0   1   0.0 0.0 26.544, 26.544 -0.76
CC051/TauUncJ f 16.769 0.0   1   0.0 0.0 16.769, 16.769 -0.9
CC051/TauUncJ m 152.8 0.0   1   0.0 0.0 152.8, 152.8 0.0
CC057/UncJ f 4.3345 0.0   1   0.0 0.0 4.3345, 4.3345 -0.99
CC059/TauUncJ f 132.4 144.3   4 72.17 1.0905 8.941, 337.6 -0.05
CC061/GeniUncJ f 18.735 0.0   1   0.0 0.0 18.735, 18.735 -0.88
CC061/GeniUncJ m 44.782 34.377   2   24.308 0.7676 20.474, 69.09 -0.65
CC068/TauUncJ f 15.726 0.0   1   0.0 0.0 15.726, 15.726 -0.91
CC074/UncJ m 117.5 0.0   1   0.0 0.0 117.5, 117.5 -0.21
CC075/UncJ f 68.68 44.996   2   31.817 0.6551 36.866, 100.5 -0.52
CC075/UncJ m 104.8 50.26   3 29.019 0.4796 46.91, 137.3 -0.29
CC078/TauUncJ m 16.921 0.0   1   0.0 0.0 16.921, 16.921 -0.82
CC080/TauUncJ f 71.28 0.0   1   0.0 0.0 71.28, 71.28 -0.5
CC080/TauUncJ m 18.312 0.0   1   0.0 0.0 18.312, 18.312 -0.81
CC084/TauJ f 11.727 12.567   2   8.886 1.0716 2.841, 20.613 -0.94
CC084/TauJ m 9.6 0.57841   2   0.409 0.0603 9.191, 10.009 -0.86
NOD/ShiLtJ f 91.91 14.714   9 4.9047 0.1601 70.89, 116.2 -0.35
NOD/ShiLtJ m 70.39 22.02   10 6.9632 0.3128 20.223, 101.2 -0.5
NZO/HlLtJ f 242.1 129.4   8 45.751 0.5345 49.372, 443.2 0.76
NZO/HlLtJ m 449.6 308.4   7 116.6 0.686 50.16, 824.7 1.79
PWK/PhJ f 371.5 202.6   10 64.06 0.5453 30.887, 649.6 1.71
PWK/PhJ m 226.1 132.9   10 42.015 0.5877 16.119, 365.0 0.44
WSB/EiJ f 590.6 478.1   9 159.4 0.8095 117.7, 1331.0 3.33
WSB/EiJ m 718.7 407.8   8 144.2 0.5674 116.8, 1140.0 3.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 316.273 72.4959399787 459.2407232661 173.3052767339
129S1/SvImJ m 502.2292222222 76.4174304825 652.9304346921 351.5280097524
A/J f 97.1821111111 76.4174304825 247.8833235809 -53.5191013587
A/J m 290.2229 72.4959399787 433.1906232661 147.2551767339
C57BL/6J f 237.73 72.4959399787 380.6977232661 94.7622767339
C57BL/6J m 201.5108 72.4959399787 344.4785232661 58.5430767339
CAST/EiJ f 413.4083 72.4959399787 556.3760232661 270.4405767339
CAST/EiJ m 444.8329 72.4959399787 587.8006232661 301.8651767339
CC002/UncJ f 88.123 162.1058498852 407.8085478114 -231.5625478114
CC002/UncJ m 129.455 162.1058498852 449.1405478113 -190.2305478114
CC004/TauUncJ f 297.75 162.1058498852 617.4355478114 -21.9355478114
CC004/TauUncJ m 413.7 162.1058498852 733.3855478114 94.0144521886
CC005/TauUncJ f 116.328 114.6261457238 342.3798187047 -109.7238187047
CC005/TauUncJ m 134.2366666667 132.3588721796 395.2588234266 -126.7854900933
CC008/GeniUncJ f 89.73125 162.1058498852 409.4167978114 -229.9542978114
CC008/GeniUncJ m 69.61915 162.1058498852 389.3046978113 -250.0663978114
CC011/UncJ f 145.808 132.3588721796 406.83015676 -115.21415676
CC011/UncJ m 72.9235 93.5918560684 257.4940370849 -111.6470370849
CC012/GeniUncJ f 126.056 102.5247415349 328.2428932245 -76.1308932245
CC012/GeniUncJ m 70.8868333333 93.5918560684 255.4573704183 -113.6837037516
CC013/GeniUncJ f 94.6606666667 132.3588721796 355.6828234266 -166.3614900933
CC013/GeniUncJ m 55.708 162.1058498852 375.3935478114 -263.9775478114
CC016/GeniUncJ f 318.68 162.1058498852 638.3655478114 -1.0055478113
CC016/GeniUncJ m 13.0785 162.1058498852 332.7640478113 -306.6070478114
CC018/UncJ f 213.4 162.1058498852 533.0855478114 -106.2855478114
CC018/UncJ m 112.286 132.3588721796 373.30815676 -148.73615676
CC019/TauUncJ f 95.617 132.3588721796 356.63915676 -165.40515676
CC019/TauUncJ m 90.74 162.1058498852 410.4255478114 -228.9455478114
CC023/GeniUncJ f 7.39 162.1058498852 327.0755478114 -312.2955478114
CC023/GeniUncJ m 106.645 162.1058498852 426.3305478114 -213.0405478114
CC025/GeniUncJ f 56.4005 102.5247415349 258.5873932245 -145.7863932245
CC025/GeniUncJ m 81.857625 114.6261457238 307.9094437047 -144.1941937047
CC028/GeniUncJ f 116.4666666667 132.3588721796 377.4888234266 -144.5554900933
CC028/GeniUncJ m 74.7153333333 132.3588721796 335.7374900933 -186.3068234266
CC041/TauUncJ f 157.698625 114.6261457238 383.7504437047 -68.3531937047
CC041/TauUncJ m 91.3411666667 93.5918560684 275.9117037516 -93.2293704182
CC075/UncJ f 68.683 162.1058498852 388.3685478114 -251.0025478114
CC075/UncJ m 104.8033333333 132.3588721796 365.8254900933 -156.2188234266
CC084/TauJ f 11.727 162.1058498852 331.4125478114 -307.9585478114
CC084/TauJ m 9.6 162.1058498852 329.2855478114 -310.0855478114
NOD/ShiLtJ f 91.9066666667 76.4174304825 242.6078791365 -58.7945458032
NOD/ShiLtJ m 70.3883 72.4959399787 213.3560232661 -72.5794232661
NZO/HlLtJ f 242.109 81.0529249426 401.9517739057 82.2662260943
NZO/HlLtJ m 449.6371428571 86.6492215231 620.5162559162 278.7580297981
PWK/PhJ f 371.5121 72.4959399787 514.4798232661 228.5443767339
PWK/PhJ m 226.0738 72.4959399787 369.0415232661 83.1060767339
WSB/EiJ f 590.6222222222 76.4174304825 741.3234346921 439.9210097524
WSB/EiJ m 718.6875 81.0529249426 878.5302739057 558.8447260943


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 409.2511111111 52.667079364 513.1147540953 305.387468127
A/J both 193.7025055556 52.667079364 297.5661485397 89.8388625714
C57BL/6J both 219.6204 51.2623707674 320.7138466123 118.5269533877
CAST/EiJ both 429.1206 51.2623707674 530.2140466123 328.0271533877
CC002/UncJ both 108.789 114.6261457238 334.8408187047 -117.2628187047
CC004/TauUncJ both 355.725 114.6261457238 581.7768187047 129.6731812953
CC005/TauUncJ both 125.2823333333 87.5471649001 297.9322616995 -47.3675950328
CC008/GeniUncJ both 79.6752 114.6261457238 305.7270187047 -146.3766187047
CC011/UncJ both 109.36575 81.0529249426 269.2085239057 -50.4770239057
CC012/GeniUncJ both 98.4714166667 69.4095781379 235.3525904558 -38.4097571225
CC013/GeniUncJ both 75.1843333333 104.6388761547 281.5404671161 -131.1718004494
CC016/GeniUncJ both 165.87925 114.6261457238 391.9310687047 -60.1725687047
CC018/UncJ both 162.843 104.6388761547 369.1991337828 -43.5131337828
CC019/TauUncJ both 93.1785 104.6388761547 299.5346337828 -113.1776337828
CC023/GeniUncJ both 57.0175 114.6261457238 283.0693187047 -169.0343187047
CC025/GeniUncJ both 69.1290625 76.8935561512 220.7692324184 -82.5111074184
CC028/GeniUncJ both 95.591 93.5918560684 280.1615370849 -88.9795370849
CC041/TauUncJ both 124.5198958333 73.9908589047 270.4357173706 -21.3959257039
CC075/UncJ both 86.7431666667 104.6388761547 293.0993004494 -119.6129671161
CC084/TauJ both 10.6635 114.6261457238 236.7153187047 -215.3883187047
NOD/ShiLtJ both 81.1474833333 52.667079364 185.0111263175 -22.7161596508
NZO/HlLtJ both 345.8730714286 59.3246665231 462.8660024647 228.8801403924
PWK/PhJ both 298.79295 51.2623707674 399.8863966123 197.6995033877
WSB/EiJ both 654.6548611111 55.6982951339 764.4963011619 544.8134210603




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA