Project measure / variable:   CSNA03   period_cc

ID, description, units MPD:112544   period_cc   peak-to-peak interval, indicating amount of time it takes for one cycle of bioluminescence circadian rhythm, in fibroblast cultures, CC   [h]  
Data set, strains CSNA03   CC w/par   40 strains     sex: both     age: 8-12wks
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  STRAIN COMPARISON PLOT
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CSNA03 - peak-to-peak interval, indicating amount of time it takes for one cycle of bioluminescence circadian rhythm, in fibroblast cultures, CC



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested35 strains34 strains
Mean of the strain means26.562   h 25.628   h
Median of the strain means24.918   h 25.49   h
SD of the strain means± 4.7827 ± 1.8739
Coefficient of variation (CV)0.1801 0.0731
Min–max range of strain means23.051   –   43.448   h 23.084   –   30.62   h
Mean sample size per strain3.9   mice 4.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.5224 1.5224 0.6662 0.4154
strain 23 690.4228 30.0184 13.1365 < 0.0001
sex:strain 23 85.0955 3.6998 1.6191 0.0424
Residuals 197 450.1681 2.2851


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 23.43 0.33438   10 0.10574 0.0143 22.682, 23.909 -0.65
129S1/SvImJ m 23.696 0.28409   9 0.0947 0.012 23.291, 24.084 -1.03
A/J f 24.325 0.49456   9 0.16485 0.0203 23.803, 25.529 -0.47
A/J m 24.717 0.57486   10 0.18179 0.0233 24.042, 25.627 -0.49
C57BL/6J f 24.07 0.26043   10 0.08236 0.0108 23.677, 24.478 -0.52
C57BL/6J m 23.608 0.35552   10 0.11243 0.0151 22.942, 24.003 -1.08
CAST/EiJ f 23.051 0.3744   10 0.11839 0.0162 22.263, 23.546 -0.73
CAST/EiJ m 23.117 0.2725   10 0.08617 0.0118 22.722, 23.695 -1.34
CC001/UncJ f 24.596 0.13364   2   0.0945 0.0054 24.502, 24.691 -0.41
CC001/UncJ m 24.611 0.0   1   0.0 0.0 24.611, 24.611 -0.54
CC002/UncJ f 27.358 0.35709   2   0.2525 0.0131 27.105, 27.61 0.17
CC002/UncJ m 25.499 1.0359   2   0.7325 0.0406 24.767, 26.232 -0.07
CC003/UncJ f 43.448 0.0   1   0.0 0.0 43.448, 43.448 3.53
CC004/TauUncJ f 23.216 0.39103   2   0.2765 0.0168 22.94, 23.493 -0.7
CC004/TauUncJ m 23.084 0.04455   2   0.0315 0.0019 23.053, 23.116 -1.36
CC005/TauUncJ f 25.134 0.93826   4 0.46913 0.0373 24.21, 26.262 -0.3
CC005/TauUncJ m 26.621 3.1538   3 1.8208 0.1185 24.638, 30.258 0.53
CC008/GeniUncJ f 32.097 8.1091   2   5.734 0.2526 26.363, 37.831 1.16
CC008/GeniUncJ m 30.62 1.6886   2   1.194 0.0551 29.426, 31.814 2.66
CC010/GeniUncJ m 24.176 0.39457   2   0.279 0.0163 23.897, 24.455 -0.78
CC011/UncJ f 24.53 0.48517   3 0.28011 0.0198 24.17, 25.082 -0.42
CC011/UncJ m 26.616 2.6809   6 1.0945 0.1007 24.129, 29.988 0.53
CC012/GeniUncJ f 24.954 2.244   5 1.0035 0.0899 23.109, 28.846 -0.34
CC012/GeniUncJ m 24.98 2.0803   6 0.84928 0.0833 23.172, 28.105 -0.35
CC013/GeniUncJ f 25.068 0.54243   3 0.31317 0.0216 24.651, 25.681 -0.31
CC013/GeniUncJ m 25.482 0.17395   2   0.123 0.0068 25.359, 25.605 -0.08
CC016/GeniUncJ f 23.937 1.3675   2   0.967 0.0571 22.97, 24.904 -0.55
CC016/GeniUncJ m 26.1 1.1257   2   0.796 0.0431 25.304, 26.896 0.25
CC017/UncJ m 26.083 0.5725   3 0.33054 0.0219 25.512, 26.657 0.24
CC018/UncJ f 24.764 0.15627   2   0.1105 0.0063 24.654, 24.875 -0.38
CC018/UncJ m 25.115 0.39788   3 0.22972 0.0158 24.863, 25.574 -0.27
CC019/TauUncJ f 24.918 1.9354   3 1.1174 0.0777 22.93, 26.796 -0.34
CC019/TauUncJ m 27.765 2.2981   2   1.625 0.0828 26.14, 29.39 1.14
CC023/GeniUncJ f 34.411 11.11   2   7.856 0.3229 26.555, 42.267 1.64
CC023/GeniUncJ m 27.853 5.3811   2   3.805 0.1932 24.048, 31.658 1.19
CC025/GeniUncJ f 28.077 1.0375   5 0.464 0.037 26.932, 29.27 0.32
CC025/GeniUncJ m 26.846 0.62265   4 0.31133 0.0232 25.984, 27.399 0.65
CC028/GeniUncJ f 24.539 0.43005   3 0.24829 0.0175 24.184, 25.017 -0.42
CC028/GeniUncJ m 25.971 2.0588   3 1.1886 0.0793 24.418, 28.306 0.18
CC030/GeniUncJ f 27.802 3.1346   2   2.2165 0.1127 25.585, 30.018 0.26
CC030/GeniUncJ m 27.219 0.0   1   0.0 0.0 27.219, 27.219 0.85
CC035/UncJ f 25.809 0.0   1   0.0 0.0 25.809, 25.809 -0.16
CC037/TauUncJ f 27.032 0.0   1   0.0 0.0 27.032, 27.032 0.1
CC041/TauUncJ f 26.505 3.7591   4 1.8795 0.1418 23.044, 31.33 -0.01
CC041/TauUncJ m 26.736 2.7002   6 1.1024 0.101 23.859, 30.826 0.59
CC043/GeniUncJ m 30.251 0.0   1   0.0 0.0 30.251, 30.251 2.47
CC051/TauUncJ f 27.049 0.0   1   0.0 0.0 27.049, 27.049 0.1
CC051/TauUncJ m 26.68 0.0   1   0.0 0.0 26.68, 26.68 0.56
CC057/UncJ f 42.715 0.0   1   0.0 0.0 42.715, 42.715 3.38
CC059/TauUncJ f 26.282 1.3001   4 0.65006 0.0495 24.372, 27.147 -0.06
CC061/GeniUncJ f 27.437 0.0   1   0.0 0.0 27.437, 27.437 0.18
CC061/GeniUncJ m 24.712 0.11597   2   0.082 0.0047 24.63, 24.794 -0.49
CC068/TauUncJ f 24.052 0.0   1   0.0 0.0 24.052, 24.052 -0.52
CC074/UncJ m 26.809 0.0   1   0.0 0.0 26.809, 26.809 0.63
CC075/UncJ f 23.271 0.24961   2   0.1765 0.0107 23.095, 23.448 -0.69
CC075/UncJ m 23.304 0.29766   3 0.17185 0.0128 23.128, 23.648 -1.24
CC078/TauUncJ m 26.757 0.0   1   0.0 0.0 26.757, 26.757 0.6
CC080/TauUncJ f 23.965 0.0   1   0.0 0.0 23.965, 23.965 -0.54
CC080/TauUncJ m 23.867 0.0   1   0.0 0.0 23.867, 23.867 -0.94
CC084/TauJ f 26.992 0.71842   2   0.508 0.0266 26.484, 27.5 0.09
CC084/TauJ m 26.881 0.46174   2   0.3265 0.0172 26.555, 27.208 0.67
NOD/ShiLtJ f 23.804 0.30918   9 0.10306 0.013 23.422, 24.393 -0.58
NOD/ShiLtJ m 24.032 0.31964   10 0.10108 0.0133 23.636, 24.729 -0.85
NZO/HlLtJ f 23.803 0.14394   8 0.05089 0.006 23.593, 24.096 -0.58
NZO/HlLtJ m 23.699 0.19854   7 0.07504 0.0084 23.377, 23.958 -1.03
PWK/PhJ f 23.84 0.20191   10 0.06385 0.0085 23.628, 24.284 -0.57
PWK/PhJ m 24.312 0.40052   10 0.12665 0.0165 23.82, 25.044 -0.7
WSB/EiJ f 23.387 0.41155   9 0.13718 0.0176 22.647, 23.863 -0.66
WSB/EiJ m 23.544 0.29271   8 0.10349 0.0124 22.967, 23.962 -1.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 23.43 0.4780289878 24.3727109444 22.4872890556
129S1/SvImJ m 23.6957777778 0.5038867964 24.6894823643 22.7020731913
A/J f 24.3248888889 0.5038867964 25.3185934754 23.3311843024
A/J m 24.717 0.4780289878 25.6597109444 23.7742890556
C57BL/6J f 24.0704 0.4780289878 25.0131109444 23.1276890556
C57BL/6J m 23.6076 0.4780289878 24.5503109444 22.6648890556
CAST/EiJ f 23.0508 0.4780289878 23.9935109444 22.1080890556
CAST/EiJ m 23.1167 0.4780289878 24.0594109444 22.1739890556
CC002/UncJ f 27.3575 1.0689053119 29.4654657548 25.2495342452
CC002/UncJ m 25.4995 1.0689053119 27.6074657548 23.3915342452
CC004/TauUncJ f 23.2165 1.0689053119 25.3244657548 21.1085342452
CC004/TauUncJ m 23.0845 1.0689053119 25.1924657548 20.9765342452
CC005/TauUncJ f 25.134 0.7558301945 26.6245568797 23.6434431203
CC005/TauUncJ m 26.6213333333 0.8727575325 28.3424801648 24.9001865018
CC008/GeniUncJ f 32.097 1.0689053119 34.2049657548 29.9890342452
CC008/GeniUncJ m 30.62 1.0689053119 32.7279657548 28.5120342452
CC011/UncJ f 24.5303333333 0.8727575325 26.2514801648 22.8091865018
CC011/UncJ m 26.6163333333 0.6171327696 27.8333679293 25.3992987374
CC012/GeniUncJ f 24.954 0.6760350778 26.287194603 23.620805397
CC012/GeniUncJ m 24.9795 0.6171327696 26.196534596 23.762465404
CC013/GeniUncJ f 25.0676666667 0.8727575325 26.7888134982 23.3465198352
CC013/GeniUncJ m 25.482 1.0689053119 27.5899657548 23.3740342452
CC016/GeniUncJ f 23.937 1.0689053119 26.0449657548 21.8290342452
CC016/GeniUncJ m 26.1 1.0689053119 28.2079657548 23.9920342452
CC018/UncJ f 24.7645 1.0689053119 26.8724657548 22.6565342452
CC018/UncJ m 25.1153333333 0.8727575325 26.8364801648 23.3941865018
CC019/TauUncJ f 24.9183333333 0.8727575325 26.6394801648 23.1971865018
CC019/TauUncJ m 27.765 1.0689053119 29.8729657548 25.6570342452
CC023/GeniUncJ f 34.411 1.0689053119 36.5189657548 32.3030342452
CC023/GeniUncJ m 27.853 1.0689053119 29.9609657548 25.7450342452
CC025/GeniUncJ f 28.0768 0.6760350778 29.409994603 26.743605397
CC025/GeniUncJ m 26.8465 0.7558301945 28.3370568797 25.3559431203
CC028/GeniUncJ f 24.5386666667 0.8727575325 26.2598134982 22.8175198352
CC028/GeniUncJ m 25.9706666667 0.8727575325 27.6918134982 24.2495198352
CC041/TauUncJ f 26.505 0.7558301945 27.9955568797 25.0144431203
CC041/TauUncJ m 26.7356666667 0.6171327696 27.9527012626 25.5186320707
CC075/UncJ f 23.2715 1.0689053119 25.3794657548 21.1635342452
CC075/UncJ m 23.3043333333 0.8727575325 25.0254801648 21.5831865018
CC084/TauJ f 26.992 1.0689053119 29.0999657548 24.8840342452
CC084/TauJ m 26.8815 1.0689053119 28.9894657548 24.7735342452
NOD/ShiLtJ f 23.8035555556 0.5038867964 24.797260142 22.8098509691
NOD/ShiLtJ m 24.0324 0.4780289878 24.9751109444 23.0896890556
NZO/HlLtJ f 23.802625 0.534452656 24.8566078774 22.7486421226
NZO/HlLtJ m 23.6987142857 0.5713539223 24.8254693768 22.5719591946
PWK/PhJ f 23.8401 0.4780289878 24.7828109444 22.8973890556
PWK/PhJ m 24.3124 0.4780289878 25.2551109444 23.3696890556
WSB/EiJ f 23.387 0.5038867964 24.3807045865 22.3932954135
WSB/EiJ m 23.5445 0.534452656 24.5984828774 22.4905171226


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 23.5628888889 0.3472800083 24.2477525122 22.8780252656
A/J both 24.5209444444 0.3472800083 25.2058080677 23.8360808212
C57BL/6J both 23.839 0.3380175389 24.5055973015 23.1724026985
CAST/EiJ both 23.08375 0.3380175389 23.7503473015 22.4171526985
CC002/UncJ both 26.4285 0.7558301945 27.9190568797 24.9379431203
CC004/TauUncJ both 23.1505 0.7558301945 24.6410568797 21.6599431203
CC005/TauUncJ both 25.8776666667 0.5772748465 27.0160982882 24.7392350452
CC008/GeniUncJ both 31.3585 0.7558301945 32.8490568797 29.8679431203
CC011/UncJ both 25.5733333333 0.534452656 26.6273162107 24.5193504559
CC012/GeniUncJ both 24.96675 0.4576779112 25.8693270129 24.0641729871
CC013/GeniUncJ both 25.2748333333 0.689975412 26.6355193771 23.9141472896
CC016/GeniUncJ both 25.0185 0.7558301945 26.5090568797 23.5279431203
CC018/UncJ both 24.9399166667 0.689975412 26.3006027104 23.5792306229
CC019/TauUncJ both 26.3416666667 0.689975412 27.7023527104 24.9809806229
CC023/GeniUncJ both 31.132 0.7558301945 32.6225568797 29.6414431203
CC025/GeniUncJ both 27.46165 0.5070263083 28.4615459522 26.4617540478
CC028/GeniUncJ both 25.2546666667 0.6171327696 26.4717012626 24.0376320707
CC041/TauUncJ both 26.6203333333 0.4878862927 27.582483662 25.6581830047
CC075/UncJ both 23.2879166667 0.689975412 24.6486027104 21.9272306229
CC084/TauJ both 26.93675 0.7558301945 28.4273068797 25.4461931203
NOD/ShiLtJ both 23.9179777778 0.3472800083 24.602841401 23.2331141545
NZO/HlLtJ both 23.7506696429 0.3911792895 24.5221061181 22.9792331677
PWK/PhJ both 24.07625 0.3380175389 24.7428473015 23.4096526985
WSB/EiJ both 23.46575 0.3672674587 24.1900304552 22.7414695448




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA